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bade578f__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
bade578f__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
bade578f__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
bade578f__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
bade578f__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
bade578f__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
2918758c_t__OXCT1_003__ENST00000510634___Flags | [Name] OXCT1-001 [Transcript ID] ENST00000196371 [bp] 3388 [Protein] 520aa [Translation ID] ENSP00000196371 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3937 [UniProt] A0A024R040 P55809 [RefSeq] NM_000436 NP_000427 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: OXCT1-003 (ENST00000510634) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000083720;r=5:41730841-41794583;t=ENST00000510634 | 7/1438042988860.4_20150728002308-00241-ip-10-236-191-2_429918489_0.json |
2918758c_t__OXCT1_003__ENST00000510634___Flags | [Name] OXCT1-004 [Transcript ID] ENST00000512084 [bp] 1593 [Protein] 123aa [Translation ID] ENSP00000421143 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P55809 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: OXCT1-003 (ENST00000510634) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000083720;r=5:41730841-41794583;t=ENST00000510634 | 7/1438042988860.4_20150728002308-00241-ip-10-236-191-2_429918489_0.json |
2918758c_t__OXCT1_003__ENST00000510634___Flags | [Name] OXCT1-002 [Transcript ID] ENST00000509987 [bp] 1441 [Protein] 334aa [Translation ID] ENSP00000425348 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PDW2 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: OXCT1-003 (ENST00000510634) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000083720;r=5:41730841-41794583;t=ENST00000510634 | 7/1438042988860.4_20150728002308-00241-ip-10-236-191-2_429918489_0.json |
2918758c_t__OXCT1_003__ENST00000510634___Flags | [Name] OXCT1-003 [Transcript ID] ENST00000510634 [bp] 1441 [Protein] 123aa [Translation ID] ENSP00000423144 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P55809 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: OXCT1-003 (ENST00000510634) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000083720;r=5:41730841-41794583;t=ENST00000510634 | 7/1438042988860.4_20150728002308-00241-ip-10-236-191-2_429918489_0.json |
2918758c_t__OXCT1_003__ENST00000510634___Flags | [Name] OXCT1-005 [Transcript ID] ENST00000513081 [bp] 350 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: OXCT1-003 (ENST00000510634) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000083720;r=5:41730841-41794583;t=ENST00000510634 | 7/1438042988860.4_20150728002308-00241-ip-10-236-191-2_429918489_0.json |
2918758c_t__OXCT1_003__ENST00000510634___Flags | [Name] OXCT1-008 [Transcript ID] ENST00000514723 [bp] 241 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: OXCT1-003 (ENST00000510634) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000083720;r=5:41730841-41794583;t=ENST00000510634 | 7/1438042988860.4_20150728002308-00241-ip-10-236-191-2_429918489_0.json |
2918758c_t__OXCT1_003__ENST00000510634___Flags | [Name] OXCT1-006 [Transcript ID] ENST00000508557 [bp] 596 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: OXCT1-003 (ENST00000510634) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000083720;r=5:41730841-41794583;t=ENST00000510634 | 7/1438042988860.4_20150728002308-00241-ip-10-236-191-2_429918489_0.json |
2918758c_t__OXCT1_003__ENST00000510634___Flags | [Name] OXCT1-007 [Transcript ID] ENST00000503374 [bp] 364 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: OXCT1-003 (ENST00000510634) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000083720;r=5:41730841-41794583;t=ENST00000510634 | 7/1438042988860.4_20150728002308-00241-ip-10-236-191-2_429918489_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-201 [Transcript ID] ENST00000396200 [bp] 4358 [Protein] 562aa [Translation ID] ENSP00000379503 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55262 [UniProt] Q9P0J1 [RefSeq] NM_001161779 NM_001161780 NP_001155251 NP_001155252 [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-001 [Transcript ID] ENST00000297598 [bp] 4272 [Protein] 537aa [Translation ID] ENSP00000297598 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6259 [UniProt] A0A024R9C0 Q9P0J1 [RefSeq] NM_001161781 NM_018444 NP_001155253 NP_060914 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-002 [Transcript ID] ENST00000520728 [bp] 2554 [Protein] 537aa [Translation ID] ENSP00000428317 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6259 [UniProt] A0A024R9C0 Q9P0J1 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-004 [Transcript ID] ENST00000517764 [bp] 2140 [Protein] 537aa [Translation ID] ENSP00000430380 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6259 [UniProt] A0A024R9C0 Q9P0J1 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-009 [Transcript ID] ENST00000518827 [bp] 1284 [Protein] 232aa [Translation ID] ENSP00000430655 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RIV4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-008 [Transcript ID] ENST00000518573 [bp] 596 [Protein] 128aa [Translation ID] ENSP00000428433 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RIE5 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-007 [Transcript ID] ENST00000518107 [bp] 581 [Protein] 76aa [Translation ID] ENSP00000430366 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RFL8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-010 [Transcript ID] ENST00000521144 [bp] 544 [Protein] 147aa [Translation ID] ENSP00000429492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RI96 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-006 [Transcript ID] ENST00000520614 [bp] 341 [Protein] 72aa [Translation ID] ENSP00000430931 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RHB9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
ce149500_pt__PDP1_004__ENST00000517764___Flags | [Name] PDP1-005 [Transcript ID] ENST00000523021 [bp] 510 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDP1-004 (ENST00000517764) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164951;r=8:93917747-93923956;t=ENST00000517764 | 9/1438042992201.62_20150728002312-00183-ip-10-236-191-2_417545415_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-001 [Transcript ID] ENST00000542285 [bp] 2660 [Protein] 705aa [Translation ID] ENSP00000438615 [CCDS] - [UniProt] P00736 [RefSeq] NM_001733 NP_001724 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-004 [Transcript ID] ENST00000536053 [bp] 2347 [Protein] 719aa [Translation ID] ENSP00000444271 [CCDS] - [UniProt] B4DPQ0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-003 [Transcript ID] ENST00000535233 [bp] 2211 [Protein] 671aa [Translation ID] ENSP00000438636 [CCDS] - [UniProt] F5H2D0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-007 [Transcript ID] ENST00000541042 [bp] 591 [Protein] 72aa [Translation ID] ENSP00000441601 [CCDS] - [UniProt] F5GWL0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-009 [Transcript ID] ENST00000540242 [bp] 575 [Protein] 156aa [Translation ID] ENSP00000442946 [CCDS] - [UniProt] F5H6Y3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-013 [Transcript ID] ENST00000538050 [bp] 553 [Protein] 49aa [Translation ID] ENSP00000444009 [CCDS] - [UniProt] F5H1N6 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-011 [Transcript ID] ENST00000543835 [bp] 521 [Protein] 156aa [Translation ID] ENSP00000445285 [CCDS] - [UniProt] F5H3N3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-006 [Transcript ID] ENST00000540610 [bp] 519 [Protein] 94aa [Translation ID] ENSP00000439223 [CCDS] - [UniProt] F5H3A3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-012 [Transcript ID] ENST00000543362 [bp] 832 [Protein] 144aa [Translation ID] ENSP00000446356 [CCDS] - [UniProt] F5H1V0 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-002 [Transcript ID] ENST00000540394 [bp] 3501 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-015 [Transcript ID] ENST00000602298 [bp] 2580 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-008 [Transcript ID] ENST00000536092 [bp] 632 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-010 [Transcript ID] ENST00000545466 [bp] 597 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
74a0b537____Gene__C1R__ENSG00000159403___Biotype | [Name] C1R-014 [Transcript ID] ENST00000543851 [bp] 476 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: C1R (ENSG00000159403) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000159403;r=12:7080209-7092607 | 9/1438042990611.52_20150728002310-00341-ip-10-236-191-2_446413993_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000229239 [bp] 1875 [Protein] 335aa [Translation ID] ENSP00000229239 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_002046 NP_002037 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | GAPDH-001 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000396861 [bp] 1348 [Protein] 335aa [Translation ID] ENSP00000380070 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_001289745 NP_001276674 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | GAPDH-002 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000396858 [bp] 1292 [Protein] 293aa [Translation ID] ENSP00000380067 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58201 [UniProt] P04406 [RefSeq] NM_001256799 NP_001243728 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | GAPDH-008 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000396859 [bp] 1256 [Protein] 335aa [Translation ID] ENSP00000380068 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8549 [UniProt] P04406 V9HVZ4 [RefSeq] NM_001289746 NP_001276675 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | GAPDH-003 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000396856 [bp] 1266 [Protein] 260aa [Translation ID] ENSP00000380065 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EUT5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | GAPDH-004 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000619601 [bp] 1086 [Protein] 293aa [Translation ID] ENSP00000478864 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P04406 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | GAPDH-201 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000466525 [bp] 1720 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | GAPDH-007 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000466588 [bp] 1363 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | GAPDH-005 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000474249 [bp] 1333 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | GAPDH-006 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000492719 [bp] 930 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | GAPDH-011 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
c2f76c5b_t__GAPDH_003__ENST00000396859___Name | [Transcript ID] ENST00000496049 [bp] 390 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | GAPDH-010 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: GAPDH-003 (ENST00000396859) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000111640;r=12:6534754-6538339;t=ENST00000396859 | 9/1438042988511.77_20150728002308-00339-ip-10-236-191-2_423484971_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-001 [Transcript ID] ENST00000549117 [bp] 1233 [Protein] 238aa [Translation ID] ENSP00000447730 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8890 [UniProt] A0A024RB05 P08962 [RefSeq] NM_001257389 NP_001244318 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-002 [Transcript ID] ENST00000257857 [bp] 1070 [Protein] 238aa [Translation ID] ENSP00000257857 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8890 [UniProt] A0A024RB05 P08962 [RefSeq] NM_001780 NP_001771 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-201 [Transcript ID] ENST00000420846 [bp] 981 [Protein] 238aa [Translation ID] ENSP00000393502 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8890 [UniProt] A0A024RB05 P08962 [RefSeq] NM_001257390 NP_001244319 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-003 [Transcript ID] ENST00000552692 [bp] 949 [Protein] 238aa [Translation ID] ENSP00000449337 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8890 [UniProt] A0A024RB05 P08962 [RefSeq] NM_001257391 NM_001267698 NP_001244320 NP_001254627 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-010 [Transcript ID] ENST00000550776 [bp] 870 [Protein] 156aa [Translation ID] ENSP00000448091 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58242 [UniProt] P08962 [RefSeq] NM_001257401 NP_001244330 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-009 [Transcript ID] ENST00000546939 [bp] 779 [Protein] 156aa [Translation ID] ENSP00000447356 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58242 [UniProt] P08962 [RefSeq] NM_001257400 NP_001244329 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-004 [Transcript ID] ENST00000552754 [bp] 682 [Protein] 215aa [Translation ID] ENSP00000446807 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58243 [UniProt] P08962 [RefSeq] NM_001257392 NP_001244321 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-007 [Transcript ID] ENST00000552164 [bp] 845 [Protein] 217aa [Translation ID] ENSP00000449281 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VWK8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-008 [Transcript ID] ENST00000551173 [bp] 788 [Protein] 215aa [Translation ID] ENSP00000446752 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8W022 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-011 [Transcript ID] ENST00000548898 [bp] 727 [Protein] 145aa [Translation ID] ENSP00000447938 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VV56 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-014 [Transcript ID] ENST00000548160 [bp] 648 [Protein] 145aa [Translation ID] ENSP00000449654 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VV56 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-012 [Transcript ID] ENST00000552067 [bp] 621 [Protein] 145aa [Translation ID] ENSP00000449684 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VV56 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-006 [Transcript ID] ENST00000546457 [bp] 607 [Protein] 133aa [Translation ID] ENSP00000450191 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VNT9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-013 [Transcript ID] ENST00000550050 [bp] 829 [Protein] 110aa [Translation ID] ENSP00000449435 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8VX62 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-015 [Transcript ID] ENST00000548117 [bp] 499 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
62492682___Gene__CD63__ENSG00000135404___Flags | [Name] CD63-016 [Transcript ID] ENST00000555199 [bp] 230 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CD63 (ENSG00000135404) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000135404;r=12:55725323-55729707 | 9/1438042988511.77_20150728002308-00041-ip-10-236-191-2_430906307_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-005 [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-004 [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-201 [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-202 [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-008 [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-020 [Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-014 [Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-007 [Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-013 [Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-010 [Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-009 [Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
d4e3742c_t__CPT1B_201__ENST00000360719___Flags | [Name] CPT1B-011 [Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-201 (ENST00000360719) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000360719 | 9/1438042992201.62_20150728002312-00063-ip-10-236-191-2_424065690_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
46b11b1c_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000566659 | 9/1438042988511.77_20150728002308-00141-ip-10-236-191-2_431478731_0.json |
c19a179e_t__PARK7_005__ENST00000377491___UniProt | [Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q99497 V9HWC2 | [
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: PARK7-005 (ENST00000377491) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491 | 9/1438042988511.77_20150728002308-00086-ip-10-236-191-2_414079500_0.json |
c19a179e_t__PARK7_005__ENST00000377491___UniProt | [Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q99497 V9HWC2 | [
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[
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"E",
"N",
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[
"-"
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: PARK7-005 (ENST00000377491) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491 | 9/1438042988511.77_20150728002308-00086-ip-10-236-191-2_414079500_0.json |
c19a179e_t__PARK7_005__ENST00000377491___UniProt | [Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q99497 V9HWC2 | [
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[
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"E",
"N",
"2",
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[
"-"
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: PARK7-005 (ENST00000377491) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491 | 9/1438042988511.77_20150728002308-00086-ip-10-236-191-2_414079500_0.json |
c19a179e_t__PARK7_005__ENST00000377491___UniProt | [Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q99497 V9HWC2 | [
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[
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"N",
"2",
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],
[
"-"
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: PARK7-005 (ENST00000377491) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491 | 9/1438042988511.77_20150728002308-00086-ip-10-236-191-2_414079500_0.json |
c19a179e_t__PARK7_005__ENST00000377491___UniProt | [Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | K7ELW0 | [
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[
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"N",
"2",
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[
"-"
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: PARK7-005 (ENST00000377491) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000377491 | 9/1438042988511.77_20150728002308-00086-ip-10-236-191-2_414079500_0.json |
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