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7c4d9797_t__RAD51_006__ENST00000526763___Biotype | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [CCDS] - [UniProt] Q06609 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-006 (ENST00000526763) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 7/1438042988311.72_20150728002308-00292-ip-10-236-191-2_438633340_0.json |
7c4d9797_t__RAD51_006__ENST00000526763___Biotype | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [CCDS] - [UniProt] Q9NZG9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-006 (ENST00000526763) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 7/1438042988311.72_20150728002308-00292-ip-10-236-191-2_438633340_0.json |
7c4d9797_t__RAD51_006__ENST00000526763___Biotype | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [CCDS] - [UniProt] E9PNT5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-006 (ENST00000526763) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 7/1438042988311.72_20150728002308-00292-ip-10-236-191-2_438633340_0.json |
7c4d9797_t__RAD51_006__ENST00000526763___Biotype | [Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [CCDS] - [UniProt] E9PJ30 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-006 (ENST00000526763) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 7/1438042988311.72_20150728002308-00292-ip-10-236-191-2_438633340_0.json |
7c4d9797_t__RAD51_006__ENST00000526763___Biotype | [Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [CCDS] - [UniProt] E9PI54 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-006 (ENST00000526763) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 7/1438042988311.72_20150728002308-00292-ip-10-236-191-2_438633340_0.json |
7c4d9797_t__RAD51_006__ENST00000526763___Biotype | [Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [CCDS] - [UniProt] H0YD61 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-006 (ENST00000526763) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 7/1438042988311.72_20150728002308-00292-ip-10-236-191-2_438633340_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-004 [Transcript ID] ENST00000584164 [bp] 873 [Protein] 145aa [Translation ID] ENSP00000463784 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11142 [UniProt] P61254 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-005 [Transcript ID] ENST00000582556 [bp] 763 [Protein] 145aa [Translation ID] ENSP00000463470 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11142 [UniProt] P61254 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-001 [Transcript ID] ENST00000293842 [bp] 524 [Protein] 145aa [Translation ID] ENSP00000293842 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11142 [UniProt] P61254 [RefSeq] NM_000987 NP_000978 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-007 [Transcript ID] ENST00000583011 [bp] 524 [Protein] 145aa [Translation ID] ENSP00000462322 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11142 [UniProt] P61254 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-003 [Transcript ID] ENST00000578812 [bp] 1002 [Protein] 110aa [Translation ID] ENSP00000463910 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3QQV1 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-008 [Transcript ID] ENST00000584343 [bp] 747 [Protein] 107aa [Translation ID] ENSP00000464239 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3QRI7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-006 [Transcript ID] ENST00000583515 [bp] 534 [Protein] 97aa [Translation ID] ENSP00000463021 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KTJ8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-013 [Transcript ID] ENST00000582485 [bp] 443 [Protein] 135aa [Translation ID] ENSP00000464143 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3QRC4 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-012 [Transcript ID] ENST00000584441 [bp] 328 [Protein] 63aa [Translation ID] ENSP00000462249 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KS10 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-010 [Transcript ID] ENST00000584906 [bp] 561 [Protein] 63aa [Translation ID] ENSP00000462619 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] J3KSS0 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-009 [Transcript ID] ENST00000585176 [bp] 353 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-002 [Transcript ID] ENST00000578115 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
69580396__Gene__RPL26__ENSG00000161970___Flags | [Name] RPL26-011 [Transcript ID] ENST00000578069 [bp] 456 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: RPL26 (ENSG00000161970) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000161970;r=17:8377520-8383213 | 7/1438042988311.72_20150728002308-00315-ip-10-236-191-2_419076319_0.json |
92622680___Gene__ALG6__ENSG00000088035___Flags | [Name] ALG6-001 [Transcript ID] ENST00000371108 [bp] 3371 [Protein] 507aa [Translation ID] ENSP00000360149 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30735 [UniProt] Q9Y672 [RefSeq] NM_013339 NP_037471 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: ALG6 (ENSG00000088035) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000088035;r=1:63367590-63438562 | 7/1438042988860.4_20150728002308-00244-ip-10-236-191-2_437422384_0.json |
92622680___Gene__ALG6__ENSG00000088035___Flags | [Name] ALG6-006 [Transcript ID] ENST00000263440 [bp] 1895 [Protein] 509aa [Translation ID] ENSP00000263440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A2A2G4 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: ALG6 (ENSG00000088035) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000088035;r=1:63367590-63438562 | 7/1438042988860.4_20150728002308-00244-ip-10-236-191-2_437422384_0.json |
92622680___Gene__ALG6__ENSG00000088035___Flags | [Name] ALG6-007 [Transcript ID] ENST00000603108 [bp] 1811 [Protein] 281aa [Translation ID] ENSP00000473934 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] S4R350 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: ALG6 (ENSG00000088035) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000088035;r=1:63367590-63438562 | 7/1438042988860.4_20150728002308-00244-ip-10-236-191-2_437422384_0.json |
92622680___Gene__ALG6__ENSG00000088035___Flags | [Name] ALG6-002 [Transcript ID] ENST00000487136 [bp] 729 [Protein] 43aa [Translation ID] ENSP00000473328 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] R4GMS5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: ALG6 (ENSG00000088035) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000088035;r=1:63367590-63438562 | 7/1438042988860.4_20150728002308-00244-ip-10-236-191-2_437422384_0.json |
92622680___Gene__ALG6__ENSG00000088035___Flags | [Name] ALG6-004 [Transcript ID] ENST00000494765 [bp] 1200 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: ALG6 (ENSG00000088035) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000088035;r=1:63367590-63438562 | 7/1438042988860.4_20150728002308-00244-ip-10-236-191-2_437422384_0.json |
92622680___Gene__ALG6__ENSG00000088035___Flags | [Name] ALG6-003 [Transcript ID] ENST00000465969 [bp] 915 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: ALG6 (ENSG00000088035) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000088035;r=1:63367590-63438562 | 7/1438042988860.4_20150728002308-00244-ip-10-236-191-2_437422384_0.json |
92622680___Gene__ALG6__ENSG00000088035___Flags | [Name] ALG6-005 [Transcript ID] ENST00000462390 [bp] 629 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: ALG6 (ENSG00000088035) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000088035;r=1:63367590-63438562 | 7/1438042988860.4_20150728002308-00244-ip-10-236-191-2_437422384_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
ebffe88b__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000492021 | 7/1438042988311.72_20150728002308-00162-ip-10-236-191-2_434147606_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
f48e9d0a_t__PDPK1_003__ENST00000389224___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: PDPK1-003 (ENST00000389224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 7/1438042988311.72_20150728002308-00324-ip-10-236-191-2_434772579_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-007 [Transcript ID] ENST00000425707 [bp] 3041 [Protein] 365aa [Translation ID] ENSP00000389993 [CCDS] CCDS45671 [UniProt] P10276 [RefSeq] NM_001145302 NP_001138774 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-001 [Transcript ID] ENST00000254066 [bp] 2414 [Protein] 462aa [Translation ID] ENSP00000254066 [CCDS] CCDS11366 [UniProt] P10276 Q6I9R7 [RefSeq] NM_000964 NP_000955 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-004 [Transcript ID] ENST00000394081 [bp] 2285 [Protein] 457aa [Translation ID] ENSP00000377643 [CCDS] CCDS42317 [UniProt] F1D8N9 P10276 [RefSeq] NM_001024809 NP_001019980 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-002 [Transcript ID] ENST00000394089 [bp] 2024 [Protein] 462aa [Translation ID] ENSP00000377649 [CCDS] CCDS11366 [UniProt] P10276 Q6I9R7 [RefSeq] NM_001145301 NP_001138773 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-003 [Transcript ID] ENST00000394086 [bp] 2008 [Protein] 478aa [Translation ID] ENSP00000377648 [CCDS] - [UniProt] A8MUP8 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-005 [Transcript ID] ENST00000475125 [bp] 813 [Protein] 186aa [Translation ID] ENSP00000462514 [CCDS] - [UniProt] J3KSJ4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-008 [Transcript ID] ENST00000577646 [bp] 733 [Protein] 66aa [Translation ID] ENSP00000464287 [CCDS] - [UniProt] J3QRM2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-006 [Transcript ID] ENST00000420042 [bp] 1052 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-009 [Transcript ID] ENST00000582914 [bp] 581 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
23f9fdff_pt__RARA_010__ENST00000579727___Biotype | [Name] RARA-010 [Transcript ID] ENST00000579727 [bp] 564 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RARA-010 (ENST00000579727) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000131759;r=17:40342399-40349818;t=ENST00000579727 | 7/1438042988311.72_20150728002308-00156-ip-10-236-191-2_434639581_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-003 [Transcript ID] ENSMUST00000184035 [bp] 3221 [Protein] 542aa [Translation ID] ENSMUSP00000139269 [CCDS] CCDS40687 [UniProt] Q9JJQ0 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-202 [Transcript ID] ENSMUST00000098566 [bp] 2193 [Protein] 542aa [Translation ID] ENSMUSP00000096165 [CCDS] CCDS40687 [UniProt] Q9JJQ0 [RefSeq] NM_018889 NP_061377 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-002 [Transcript ID] ENSMUST00000184389 [bp] 2079 [Protein] 542aa [Translation ID] ENSMUSP00000139076 [CCDS] CCDS40687 [UniProt] Q9JJQ0 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-201 [Transcript ID] ENSMUST00000093819 [bp] 2866 [Protein] 120aa [Translation ID] ENSMUSP00000091337 [CCDS] - [UniProt] Q8BSC4 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-001 [Transcript ID] ENSMUST00000183746 [bp] 6838 [Protein] 542aa [Translation ID] ENSMUSP00000138885 [CCDS] CCDS40687 [UniProt] Q9JJQ0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-005 [Transcript ID] ENSMUST00000183904 [bp] 664 [Protein] 154aa [Translation ID] ENSMUSP00000138897 [CCDS] - [UniProt] V9GWY8 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-006 [Transcript ID] ENSMUST00000185027 [bp] 1788 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-007 [Transcript ID] ENSMUST00000184776 [bp] 1594 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
9b306aec__Pigb_202__ENSMUST00000098566___Biotype | [Name] Pigb-004 [Transcript ID] ENSMUST00000183587 [bp] 694 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Protein summary - Transcript: Pigb-202 (ENSMUST00000098566) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/ProteinSummary?db=core;g=ENSMUSG00000079469;r=9:73015696-73039699;t=ENSMUST00000098566 | 7/1438042988860.4_20150728002308-00111-ip-10-236-191-2_433040559_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
7712f9de_pt__SNCA_005__ENST00000345009___Flags | [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-005 (ENST00000345009) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90647204-90758290;t=ENST00000345009 | 7/1438043060830.93_20150728002420-00290-ip-10-236-191-2_418408126_0.json |
ce42a3d6__SYNGAP1_009__ENST00000449372___Biotype | [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
ce42a3d6__SYNGAP1_009__ENST00000449372___Biotype | [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
ce42a3d6__SYNGAP1_009__ENST00000449372___Biotype | [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
ce42a3d6__SYNGAP1_009__ENST00000449372___Biotype | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
ce42a3d6__SYNGAP1_009__ENST00000449372___Biotype | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
ce42a3d6__SYNGAP1_009__ENST00000449372___Biotype | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
ce42a3d6__SYNGAP1_009__ENST00000449372___Biotype | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
ce42a3d6__SYNGAP1_009__ENST00000449372___Biotype | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-009 (ENST00000449372) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000197283;r=6:33387847-33421466;t=ENST00000449372 | 7/1438043060830.93_20150728002420-00336-ip-10-236-191-2_429015353_0.json |
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