NofPmids
float64
1
96
NofSnps
float64
0
1.07k
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stringclasses
3 values
diseaseId
stringlengths
8
12
diseaseName
stringclasses
587 values
diseaseType
stringclasses
3 values
disease_mention
stringlengths
1
89
geneId
stringlengths
1
30
geneSymbol
stringlengths
2
10
gene_mention
stringlengths
2
69
originalSource
stringclasses
1 value
pmid
int64
104k
28.2M
raw_sentence
stringlengths
39
1.09k
score
float64
0.2
1
sentence
stringlengths
143
948
source
stringclasses
9 values
null
null
Negative
MESH:D012909
null
null
envenomation
2187
null
Fab
null
28,165,801
BACKGROUND: Western Pygmy Rattlesnake (WPR) envenomation reportedly causes refractory and persistent coagulopathy when treated with CroFab( ) (Crotalidae Polyvalent Immune Fab).
null
null
null
4
1
Biomarker
C0043459
Zellweger Syndrome
disease
ZS
5192
PEX10
PEX10
CTD_human
10,862,081
All four PEX10-deficient Zellweger Syndrome (ZS) patients were found to have nonsense, frameshift, or splice site mutations that remove large portions of the PEX10 coding region.
0.400275
All four <span class="gene" id="10862081-4-9-14">PEX10</span>-deficient <span class="disease" id="10862081-4-25-43">Zellweger Syndrome</span> (<span class="disease" id="10862081-4-45-47">ZS</span>) patients were found to have nonsense, frameshift, or splice site mutations that remove large portions of the <span class="gene" id="10862081-4-158-163">PEX10</span> coding region.
CTD_human;ORPHANET
4
0
Biomarker
C0023903
Liver neoplasms
group
liver tumors
9970
NR1I3
CAR
CTD_human
24,449,422
Phenobarbital (PB) is a prototypical nongenotoxic carcinogen that activates the constitutive androstane receptor (CAR) resulting in rodent liver tumors.
0.200824
Phenobarbital (PB) is a prototypical nongenotoxic carcinogen that activates the <span class="gene" id="24449422-2-80-112">constitutive androstane receptor</span> (<span class="gene" id="24449422-2-114-117">CAR</span>) resulting in rodent <span class="disease" id="24449422-2-139-151">liver tumors</span>.
CTD_human
null
null
Negative
MESH:D005355
null
null
fibrosis
15289
null
HMGB1
null
28,025,989
Furthermore, knockdown of HMGB1 enhanced cell proliferation whereas it inhibited the apoptosis and fibrosis of M6200 cells.
null
null
null
1
0
Biomarker
C0025202
melanoma
disease
melanoma
4293
MAP3K9
MAP3K9
CTD_human
22,197,930
Attenuation of MAP3K9 function in melanoma cells using siRNA led to increased cell viability after temozolomide treatment, suggesting that decreased MAP3K pathway activity can lead to chemoresistance in melanoma.
0.200549
Attenuation of <span class="gene" id="22197930-7-15-21">MAP3K9</span> function in <span class="disease" id="22197930-7-34-42">melanoma</span> cells using siRNA led to increased cell viability after temozolomide treatment, suggesting that decreased MAP3K pathway activity can lead to chemoresistance in <span class="disease" id="22197930-7-203-211">melanoma</span>.
CTD_human
6
11
Biomarker
C1845862
Creatine deficiency, X-linked
disease
X-linked creatine deficiency syndrome
6535
SLC6A8
SLC6A8
CTD_human
12,210,795
X-linked creatine deficiency syndrome: a novel mutation in creatine transporter gene SLC6A8.
0.68522
<span class="disease" id="12210795-0-0-37">X-linked creatine deficiency syndrome</span>: a novel mutation in <span class="gene" id="12210795-0-59-79">creatine transporter</span> gene <span class="gene" id="12210795-0-85-91">SLC6A8</span>.
CTD_human;ORPHANET;UNIPROT
null
null
Negative
MESH:D005870
null
null
giant cell tumors
8626
null
p63
null
28,059,095
Mutational status was compared with clinical data and, for giant cell tumors of the bone, with p63 immunostaining status.
null
null
null
1
0
Biomarker
C0006118
Brain Neoplasms
group
brain tumours
23411
SIRT1
Sirt-1
CTD_human
22,523,472
Tissue scan microarray analysis of grade I-IV brain tumours cDNA revealed increased gene expression of Sirt-1 from grade I-III but surprisingly not in grade IV brain tumours.
0.2
Tissue scan microarray analysis of grade I-IV <span class="disease" id="22523472-6-46-59">brain tumours</span> cDNA revealed increased gene expression of <span class="gene" id="22523472-6-103-109">Sirt-1</span> from grade I-III but surprisingly not in grade IV <span class="disease" id="22523472-6-160-173">brain tumours</span>.
CTD_human
null
null
Negative
MESH:D029424
null
null
chronic obstructive pulmonary disease
260431
null
COPD
null
28,182,569
Acute exacerbations of chronic obstructive pulmonary disease (COPD) can be prevented by inhaled treatment.
null
null
null
2
0
Therapeutic
C0020619
Hypogonadism
disease
hypogonadism
3952
LEP
leptin
CTD_human
15,070,752
Phenotypic effects of leptin replacement on morbid obesity, diabetes mellitus, hypogonadism, and behavior in leptin-deficient adults.
0.481099
Phenotypic effects of <span class="gene" id="15070752-0-22-28">leptin</span> replacement on morbid obesity, diabetes mellitus, <span class="disease" id="15070752-0-79-91">hypogonadism</span>, and behavior in <span class="gene" id="15070752-0-109-115">leptin</span>-deficient adults.
CTD_human;HPO
1
0
Biomarker
C1609433
Congenital absence of kidneys syndrome
disease
bilateral renal agenesis
5979
RET
RET
CTD_human
18,252,215
Mutations in RET were found in 7 of 19 fetuses with bilateral renal agenesis (37%) and 2 of 10 fetuses (20%) with unilateral agenesis.
0.401374
Mutations in <span class="gene" id="18252215-4-13-16">RET</span> were found in 7 of 19 fetuses with <span class="disease" id="18252215-4-52-76">bilateral renal agenesis</span> (37%) and 2 of 10 fetuses (20%) with unilateral agenesis.
CTD_human;ORPHANET
4
0
Biomarker
C0020429
Hyperalgesia
phenotype
hyperalgesia
3557
IL1RN
IL-1ra
CTD_human
15,317,861
Similarly, intrathecal IL-1ra administered after the establishment of morphine tolerance reversed hyperalgesia and prevented the additional development of tolerance and allodynia.
0.28
Similarly, intrathecal <span class="gene" id="15317861-5-23-29">IL-1ra</span> administered after the establishment of morphine tolerance reversed <span class="disease" id="15317861-5-98-110">hyperalgesia</span> and prevented the additional development of tolerance and allodynia.
CTD_human
4
0
Biomarker
C0038220
Status Epilepticus
disease
status epilepticus
847
CAT
Catalase
CTD_human
15,245,787
Catalase activity in cerebellum, hippocampus, frontal cortex and striatum after status epilepticus induced by pilocarpine in Wistar rats.
0.2
<span class="gene" id="15245787-0-0-8">Catalase</span> activity in cerebellum, hippocampus, frontal cortex and striatum after <span class="disease" id="15245787-0-80-98">status epilepticus</span> induced by pilocarpine in Wistar rats.
CTD_human
null
null
Negative
MESH:D029424
null
null
chronic obstructive pulmonary disease
260431
null
COPD
null
28,104,604
Cigarette smoke usage is prevalent in human immunodeficiency virus (HIV)-positive patients, and, despite highly active antiretroviral therapy, these individuals develop an accelerated form of chronic obstructive pulmonary disease (COPD).
null
null
null
2
0
Biomarker
C0004096
Asthma
disease
asthmatics
94103
ORMDL3
ORMDL3
CTD_human
25,256,354
In summary, this study supports that there are differences in DNA methylation at this locus between asthmatics and controls; and both SNPs and CpG sites are independently associated with ORMDL3 expression.
0.249823
In summary, this study supports that there are differences in DNA methylation at this locus between <span class="disease" id="25256354-11-100-110">asthmatics</span> and controls; and both SNPs and CpG sites are independently associated with <span class="gene" id="25256354-11-187-193">ORMDL3</span> expression.
CTD_human
null
null
Negative
MESH:D013789
null
null
thalassemia
1727
null
b5R
null
28,016,992
We proposed that common African-American genetic polymorphisms such as G6PD A+, G6PD A-, African polymorphism of b5R, a thalassemia, and sickle trait could influence the development and course of this malignant disease.
null
null
null
null
null
Negative
MESH:D009369
null
null
tumor
16193
null
IL-6
null
28,134,325
In addition to IL-4, basophils produce IL-6 and tumor necrosis factor (TNF)-a in response to immunoglobulin E (IgE) crosslinking.
null
null
null
1
0
Biomarker
C0003873
Rheumatoid Arthritis
disease
rheumatoid arthritis
4313
MMP2
matrix metalloproteinase-2
CTD_human
16,872,482
Macrophage migration inhibitory factor: a mediator of matrix metalloproteinase-2 production in rheumatoid arthritis.
0.212492
Macrophage migration inhibitory factor: a mediator of <span class="gene" id="16872482-0-54-80">matrix metalloproteinase-2</span> production in <span class="disease" id="16872482-0-95-115">rheumatoid arthritis</span>.
CTD_human
4
0
Biomarker
C0376634
Craniofacial Abnormalities
group
craniofacial abnormalities
4487
MSX1
Msx1
CTD_human
14,654,219
The Msx1 gene controls many aspects of craniofacial development, as evidenced by craniofacial abnormalities seen in Msx1(-/-) mice, including the arrest of tooth development and the absence of the alveolar bone.
0.200275
The <span class="gene" id="14654219-4-4-8">Msx1</span> gene controls many aspects of craniofacial development, as evidenced by <span class="disease" id="14654219-4-81-107">craniofacial abnormalities</span> seen in <span class="gene" id="14654219-4-116-120">Msx1</span>(-/-) mice, including the arrest of tooth development and the absence of the alveolar bone.
CTD_human
null
null
Negative
MESH:C536352
null
null
staphyloma
875703
null
mg/0.05
null
28,203,196
Four consecutive, monthly injections of bevacizumab (1.25 mg/0.05 mL) were administered in the left eye; subsequently, the subretinal fluid gradually dissipated from the macula and became localized at the superior border of the staphyloma.
null
null
null
null
null
Negative
MESH:D004194
null
null
stable disease
2247
null
FGF2
null
28,022,551
Pts with RECIST response continued on open-label B, those with progressive disease (PD) went off study, and those with stable disease (SD) were randomized 1:1 to B or placebo (P), stratified by FGF2 expression (IHC + or -), until PD or unacceptable toxicity.
null
null
null
null
null
Negative
MESH:C580334
null
null
UPS
4311
null
CD10
null
28,079,637
OBJECTIVE: The authors aimed to identify the clinical, histologic, and immunohistochemical expression of LN2, ezrin, and CD10 in AFX and UPS tumors.
null
null
null
1
0
Biomarker
C0022661
Kidney Failure, Chronic
disease
CRF
2168
FABP1
L-FABP
CTD_human
19,878,707
CRF resulted in hypertension, proteinuria, renal tissue lipid accumulation, up-regulation of scavenger receptor A1 (SR-A1), acyl-CoA cholesterol acyltransferase-1 (ACAT1), carbohydrate-responsive element binding protein (ChREBP), fatty acid synthase (FAS), acyl-CoA carboxylase (ACC), liver X receptor (LXR), ATP binding cassette (ABC) A-1, ABCG-1, and SR-B1 and down-regulation of sterol responsive element binding protein-1 (SREBP-1), SREBP-2, HMG-CoA reductase, PPAR-alpha, fatty acid binding protein (L-FABP), and CPT1A.
0.2
<span class="disease" id="19878707-5-0-3">CRF</span> resulted in hypertension, proteinuria, renal tissue lipid accumulation, up-regulation of scavenger receptor A1 (SR-A1), acyl-CoA cholesterol acyltransferase-1 (ACAT1), carbohydrate-responsive element binding protein (ChREBP), fatty acid synthase (FAS), acyl-CoA carboxylase (ACC), liver X receptor (LXR), ATP binding cassette (ABC) A-1, ABCG-1, and SR-B1 and down-regulation of sterol responsive element binding protein-1 (SREBP-1), SREBP-2, HMG-CoA reductase, PPAR-alpha, fatty acid binding protein (<span class="gene" id="19878707-5-505-511">L-FABP</span>), and CPT1A.
CTD_human
null
null
Negative
OMIM:113900
null
null
PCCD
79868
null
ALG13
null
28,178,702
Recently, we identified a missense variant (p.T141L) in the short isoform 2 of the X-linked gene asparagine-linked glycosylation 13 (ALG13-is2), which segregated with focal segmental glomerulosclerosis and PCCD in a large Australian pedigree; however, any evidence of its pathogenicity was demonstrated.
null
null
null
null
null
Negative
MESH:D000012
null
null
ABL
207
null
AKT
null
28,136,611
Out of the 2,702 validated peptide targets and 6,173 kinase-substrate nodes we compiled, we chose a subset of 151 biological peptides predicted to specifically report on tyrosine / serine / threonine kinases, including EGFR, ERK, AKT, SRC, ABL.
null
null
null
null
null
Negative
MESH:D007249
null
null
inflammation
18024
null
Nrf2
null
28,161,195
CRS and ARS up-regulated mRNA levels of inflammation-related molecules (TNFa, IL-1b, IL-6 and TLR4) and oxidative stress molecules (gp91phox, iNOS and Nrf2) in the mouse hypothalamus.
null
null
null
null
null
Negative
MESH:D007511
null
null
ischemia
20346
null
Sema3A
null
28,013,333
However, there is no known correlation between Sema3A and intestinal ischemia/reperfusion (I/R) injury.
null
null
null
4
0
Biomarker
C0007370
Catalepsy
disease
catalepsy
1813
DRD2
dopamine D2 receptor
CTD_human
7,845,605
In the catalepsy test, felbamate antagonized dopamine D2 receptor- but not D1 receptor-induced akinesia.
0.2
In the <span class="disease" id="7845605-2-7-16">catalepsy</span> test, felbamate antagonized <span class="gene" id="7845605-2-45-65">dopamine D2 receptor</span>- but not D1 receptor-induced akinesia.
CTD_human
null
null
Negative
MESH:D009369
null
null
tumor
16193
null
IL-6
null
28,174,688
LPS induced kidney dysfunction via activation of NF-kB and mitogen-activated protein kinases (MAPKs), by excessive production of IL-6, tumor necrosis factor-a, inducible nitric oxide synthase, and COX-2, producing perturbance in energy metabolism and oxidative stress.
null
null
null
null
null
Negative
MESH:D064726
null
null
triple-negative breast cancer
57650
null
CIP2A
null
28,027,514
We investigated the efficacy and mechanism of TD52, an erlotinib derivative with minimal p-EGFR inhibition but significant CIP2A downregulation, in triple-negative breast cancer (TNBC) cells.
null
null
null
null
null
Negative
MESH:D014947
null
null
trauma
16193
null
IL-6
null
28,114,167
Thus, the objective of our study was to evaluate a dose-dependent therapeutic impact of leptin with possible IL-6-dependency on immune actions and outcome in a trauma/sepsis model.
null
null
null
null
null
Negative
MESH:D001927
null
null
brain damage
25742
null
S100b
null
28,101,164
The results showed that administration of PF for 28 days significantly decreased the expression levels of NSE and S100b, both sensitive markers for brain damage, in vascular dementia (VD) model rats.
null
null
null
null
null
Negative
MESH:C535706
null
null
MADB
7431
null
vimentin
null
28,050,601
Interestingly, the assembly of the vimentin microfibrils in MADB fibroblasts improved with rapamycin and dimethylsulfoxide.
null
null
null
1
0
Biomarker
C0036341
Schizophrenia
disease
schizophrenia
3362
HTR6
5-HT(6
CTD_human
12,165,372
An RT-PCR study of 5-HT(6) and 5-HT(7) receptor mRNAs in the hippocampal formation and prefrontal cortex in schizophrenia.
0.220197
An RT-PCR study of <span class="gene" id="12165372-0-19-25">5-HT(6</span>) and 5-HT(7) receptor mRNAs in the hippocampal formation and prefrontal cortex in <span class="disease" id="12165372-0-108-121">schizophrenia</span>.
CTD_human
2
0
Biomarker
C0011881
Diabetic Nephropathy
disease
diabetic nephropathy
7040
TGFB1
transforming growth factor-beta 1
CTD_human
19,960,420
Mangiferin significantly inhibited glomerular extracellular matrix expansion and accumulation and transforming growth factor-beta 1 overexpression in glomeruli of diabetic nephropathy rats.
0.32647
Mangiferin significantly inhibited glomerular extracellular matrix expansion and accumulation and <span class="gene" id="19960420-5-98-131">transforming growth factor-beta 1</span> overexpression in glomeruli of <span class="disease" id="19960420-5-163-183">diabetic nephropathy</span> rats.
CTD_human
1
0
Biomarker
C1531773
Currarino triad
disease
Currarino syndrome
5125
PCSK5
Pcsk5
CTD_human
18,519,639
VACTERL/caudal regression/Currarino syndrome-like malformations in mice with mutation in the proprotein convertase Pcsk5.
0.200275
VACTERL/caudal regression/<span class="disease" id="18519639-0-26-44">Currarino syndrome</span>-like malformations in mice with mutation in the proprotein convertase <span class="gene" id="18519639-0-115-120">Pcsk5</span>.
CTD_human
4
1
Biomarker
C0010308
Congenital Hypothyroidism
disease
congenital hypothyroidism
7173
TPO
TPO
CTD_human
14,751,036
The objective of this study was to screen and subsequently identify TPO gene mutations in patients with congenital hypothyroidism with evidence of total iodine organification defects (TIOD) or partial iodine organification defect (PIOD) as defined by the perchlorate discharge test.
0.220561
The objective of this study was to screen and subsequently identify <span class="gene" id="14751036-2-68-71">TPO</span> gene mutations in patients with <span class="disease" id="14751036-2-104-129">congenital hypothyroidism</span> with evidence of total iodine organification defects (TIOD) or partial iodine organification defect (PIOD) as defined by the perchlorate discharge test.
CTD_human
null
null
Negative
MESH:D015461
null
null
T-PLL
4843
null
NOS
null
28,129,454
These two diseases can often be confused with each other; therefore, we aimed to determine the clinical and pathological differences between T-PLL and PTCL, NOS.
null
null
null
69
0
Biomarker
C0020538
Hypertensive disease
group
hypertension
183
AGT
Angiotensin II
CTD_human
12,084,390
The aim of this study was to investigate the effects of Angiotensin II (ANG II) receptor antagonist losartan on the blood-brain barrier (BBB) permeability in L-NAME-induced hypertension and/or in ANG II-induced acute hypertension in normotensive and hypertensive rats.
0.52
The aim of this study was to investigate the effects of <span class="gene" id="12084390-2-56-70">Angiotensin II</span> (ANG II) receptor antagonist losartan on the blood-brain barrier (BBB) permeability in L-NAME-induced <span class="disease" id="12084390-2-173-185">hypertension</span> and/or in ANG II-induced acute <span class="disease" id="12084390-2-217-229">hypertension</span> in normotensive and hypertensive rats.
CTD_human
null
null
Negative
MESH:D009369
null
null
tumor
20296
null
monocyte chemotactic protein-1
null
28,109,017
The messenger RNA levels of monocyte chemotactic protein-1 and tumor necrosis factor-a in the liver and epididymal fat tissue were increased in the HFD group compared with the control group and were downregulated in the HFD + CB group.
null
null
null
null
null
Negative
MESH:D004194
null
null
stable disease
2247
null
FGF2
null
28,021,070
Pts with stable disease (SD) were randomized 1:1 to B or placebo (P), stratified by FGF2 expression (IHC + or -), until PD or unacceptable toxicity.
null
null
null
null
null
Negative
MESH:D011502
null
null
HCD
3569
null
interleukin-6
null
28,193,578
We observed elevated colonic mucosal interleukin-6 (IL-6) expression in HCD-consuming pigs compared to standard diet controls (SD, P=.04), and IL-6 strongly correlated with Ki-67 proliferative index and zone, early biomarkers of colon cancer risk (r=0.604 and 0.743 and P=.017 and .002, respectively).
null
null
null
null
null
Negative
MESH:D009101
null
null
MM
9622;51155
null
arms 1 and 2
null
28,016,923
METHODS: Patients with symptomatic Durie-Salmon stage I, or stage II/III previously untreated MM were randomized to one of 2 induction regimens given for 12 cycles: arms 1 and 2 -melphalan 9mg/m2 po and prednisone 100 mg po daily for 4 days q 4 weeks; arms 3 and 4 - melphalan as above and DEX 40 mg for 4 days q 4 weeks.
null
null
null
1
0
Biomarker
C0162671
MELAS Syndrome
disease
MELAS syndrome
4574
TRNS1
MTTS1
CTD_human
17,894,844
MELAS syndrome in a patient with a point mutation in MTTS1.
0.400275
<span class="disease" id="17894844-0-0-14">MELAS syndrome</span> in a patient with a point mutation in <span class="gene" id="17894844-0-53-58">MTTS1</span>.
CTD_human;ORPHANET
4
0
Biomarker
C0036341
Schizophrenia
disease
schizophrenia
2571
GAD1
GAD1
CTD_human
17,942,719
Alterations in schizophrenia included decreased GAD1 expression and H3K4-trimethylation, predominantly in females and in conjunction with a risk haplotype at the 5' end of GAD1.
0.246224
Alterations in <span class="disease" id="17942719-3-15-28">schizophrenia</span> included decreased <span class="gene" id="17942719-3-48-52">GAD1</span> expression and H3K4-trimethylation, predominantly in females and in conjunction with a risk haplotype at the 5' end of <span class="gene" id="17942719-3-172-176">GAD1</span>.
CTD_human
null
null
Negative
MESH:D007249
null
null
inflammation
18126
null
iNOS
null
28,161,195
CRS and ARS up-regulated mRNA levels of inflammation-related molecules (TNFa, IL-1b, IL-6 and TLR4) and oxidative stress molecules (gp91phox, iNOS and Nrf2) in the mouse hypothalamus.
null
null
null
1
0
Biomarker
C0026764
Multiple Myeloma
disease
multiple myeloma
1029
CDKN2A
p16
CTD_human
16,008,847
[Hypermethylation of CpG island of p16 gene and arsenic trioxide induced p16 gene demethylation in multiple myeloma].
0.215081
[Hypermethylation of CpG island of <span class="gene" id="16008847-0-35-38">p16</span> gene and arsenic trioxide induced <span class="gene" id="16008847-0-73-76">p16</span> gene demethylation in <span class="disease" id="16008847-0-99-115">multiple myeloma</span>].
CTD_human
2
0
Biomarker
C0004096
Asthma
disease
asthma
3383
ICAM1
ICAM1
CTD_human
25,003,170
Both ICAM1 and ETS, and interactions between these two factors are likely to be involved in the development of asthma in childhood.
0.218218
Both <span class="gene" id="25003170-10-5-10">ICAM1</span> and ETS, and interactions between these two factors are likely to be involved in the development of <span class="disease" id="25003170-10-111-117">asthma</span> in childhood.
CTD_human
null
null
Negative
MESH:D008107
null
null
endothelial dysfunction
24179
null
angiotensin II
null
28,105,253
In the renal arteries of Wistar-Kyoto rats (WKY), DMC prevented the endothelial dysfunction caused by angiotensin II.
null
null
null
null
null
Negative
MESH:C567886
null
null
XPC
2067
null
ERCC1
null
28,115,302
Thirty-eight polymorphisms in eight NER genes were genotyped by Sequenom MassARRAY platform, including XPA, XPC, DDB2, XPB (ERCC3), XPD (ERCC2), ERCC1, XPF (ERCC4), and XPG (ERCC5).
null
null
null
2
0
Biomarker
C0020538
Hypertensive disease
group
hypertension
2908
NR3C1
glucocorticoid receptor
CTD_human
20,659,135
The glucocorticoid receptor is required for experimental adrenocorticotrophic hormone-induced hypertension in mice.
0.415108
The <span class="gene" id="20659135-0-4-27">glucocorticoid receptor</span> is required for experimental adrenocorticotrophic hormone-induced <span class="disease" id="20659135-0-94-106">hypertension</span> in mice.
CTD_human;HPO
null
null
Negative
MESH:D009369
null
null
cancer
21926
null
TNF-a
null
28,212,561
In addition, the combination therapy enhanced systemic anti-cancer immunity by increasing the abundances of T cell populations expressing IFN-y and TNF-a.
null
null
null
1
0
Biomarker
C0030354
Papilloma
disease
papillomas
595
CCND1
Cyclin D1
CTD_human
12,151,359
Cyclin D1 overexpression was observed in 26 of 47 (55%) PN hyperplasias, 3 of 4 (75%) papillomas, and 10 of 18 (56%) TCCs.
0.200824
<span class="gene" id="12151359-17-0-9">Cyclin D1</span> overexpression was observed in 26 of 47 (55%) PN hyperplasias, 3 of 4 (75%) <span class="disease" id="12151359-17-86-96">papillomas</span>, and 10 of 18 (56%) TCCs.
CTD_human
1
0
Biomarker
C0032460
Polycystic Ovary Syndrome
disease
PCOS
2549
GAB1
GAB1
CTD_human
21,411,543
Progesterone-regulated genes, including mitogen-inducible gene 6 (MIG6), leukemia inhibitory factor (LIF), GRB2-associated binding protein 1 (GAB1), S100P, and claudin-4 were significantly lower in PCOS endometrium; whereas cell proliferation genes, such as Anillin and cyclin B1, were up-regulated.
0.200549
Progesterone-regulated genes, including mitogen-inducible gene 6 (MIG6), leukemia inhibitory factor (LIF), <span class="gene" id="21411543-11-107-140">GRB2-associated binding protein 1</span> (<span class="gene" id="21411543-11-142-146">GAB1</span>), S100P, and claudin-4 were significantly lower in <span class="disease" id="21411543-11-198-202">PCOS</span> endometrium; whereas cell proliferation genes, such as Anillin and cyclin B1, were up-regulated.
CTD_human
55
13
Biomarker
C0002395
Alzheimer's Disease
disease
AD
351
APP
APP
CTD_human
20,111,991
Amyloid beta peptide (Abeta), generated by proteolytic cleavage of the amyloid precursor protein (APP), plays a pivotal role in the pathogenesis of Alzheimer's disease (AD).
0.885734
Amyloid beta peptide (Abeta), generated by proteolytic cleavage of the <span class="gene" id="20111991-1-71-96">amyloid precursor protein</span> (<span class="gene" id="20111991-1-98-101">APP</span>), plays a pivotal role in the pathogenesis of <span class="disease" id="20111991-1-148-167">Alzheimer's disease</span> (<span class="disease" id="20111991-1-169-171">AD</span>).
CTD_human;HPO;ORPHANET;UNIPROT
null
null
Negative
MESH:C562592
null
null
XPF
21750
null
TRF2
null
28,088,627
In our previous study, we showed that low-dose gemcitabine caused telomere shortening by stabilizing TRF2 that was required for XPF-dependent telomere loss.
null
null
null
3
2
Biomarker
C0035334
Retinitis Pigmentosa
disease
retinitis pigmentosa
6121
RPE65
RPE65
CTD_human
16,272,259
Identification of mutations in the AIPL1, CRB1, GUCY2D, RPE65, and RPGRIP1 genes in patients with juvenile retinitis pigmentosa.
0.612804
Identification of mutations in the AIPL1, CRB1, GUCY2D, <span class="gene" id="16272259-0-56-61">RPE65</span>, and RPGRIP1 genes in patients with juvenile <span class="disease" id="16272259-0-107-127">retinitis pigmentosa</span>.
CTD_human;HPO;ORPHANET
1
0
Biomarker
C0004352
Autistic Disorder
disease
autistic
5175
PECAM1
PECAM-1
CTD_human
17,509,538
There was a negative correlation between serum levels of PECAM-1 and head circumference at birth in the autistic subjects.
0.202733
There was a negative correlation between serum levels of <span class="gene" id="17509538-7-57-64">PECAM-1</span> and head circumference at birth in the <span class="disease" id="17509538-7-104-112">autistic</span> subjects.
CTD_human
null
null
Negative
MESH:D002280
null
null
basal cell carcinomas
261726
null
tip
null
28,108,241
Over the past 5 years, 24 patients received nasal tip reconstruction with this flap following the resection of basal cell carcinomas.
null
null
null
null
null
Negative
MESH:D005235
null
null
NASH
20296
null
MCP-1
null
28,076,416
These data suggest that therapeutic interventions for NASH directed at the MCP-1/CCR2 pathway should be initiated early.
null
null
null
11
0
Biomarker
C1458155
Mammary Neoplasms
group
breast tumors
2099
ESR1
ESR1
CTD_human
24,185,512
We conducted a comprehensive genetic analysis of two independent cohorts of metastatic ER-positive breast tumors and identified mutations in ESR1 affecting the ligand-binding domain (LBD) in 14 of 80 cases.
0.379256
We conducted a comprehensive genetic analysis of two independent cohorts of metastatic <span class="gene" id="24185512-3-87-89">ER</span>-positive <span class="disease" id="24185512-3-99-112">breast tumors</span> and identified mutations in <span class="gene" id="24185512-3-141-145">ESR1</span> affecting the ligand-binding domain (LBD) in 14 of 80 cases.
CTD_human
1
0
Biomarker
C0017601
Glaucoma
disease
glaucoma
1030
CDKN2B
CDKN2B
CTD_human
21,532,571
We also show that CDKN2A and CDKN2B are upregulated in the retina of a rat model of glaucoma.
0.201099
We also show that CDKN2A and <span class="gene" id="21532571-5-29-35">CDKN2B</span> are upregulated in the retina of a rat model of <span class="disease" id="21532571-5-84-92">glaucoma</span>.
CTD_human
null
null
Negative
MESH:D005764
null
null
gastroesophageal reflux disease
221937
null
MNF
null
28,040,500
MATERIALS _ METHODS: We prospectively compared 40 consecutive patients with gastroesophageal reflux disease who underwent anti-reflux surgery: 20 Nissen fundoplication (NF) and 20 the MNF approach.
null
null
null
null
null
Negative
MESH:D000544
null
null
AD
12569
null
p35
null
28,085,018
injections of a modified truncated 24-aa peptide (TFP5), derived from the cdk5 activator p35, penetrated the blood-brain barrier and significantly rescued AD-like pathology in 5XFAD model mice.
null
null
null
null
null
Negative
MESH:D006623
null
null
VHL
1956
null
EGFR
null
28,143,107
The gene probes chosen for this analysis were; VHL, FHIT, FGFR1/3, PDGFb, PDGFRb, EGFR, MYC and IGH@.
null
null
null
null
null
Negative
MESH:C536962
null
null
TS
2067
null
ERCC1
null
28,147,793
Biomarker expression differences that did not meet statistical significance: ERCC1, MGMT, PDGFRA, RRM1, SPARC, TS and TOPO1.
null
null
null
1
0
Biomarker
C0024117
Chronic Obstructive Airway Disease
disease
COPD
4323
MMP14
MMP14
CTD_human
19,661,247
Taken together, these findings implicate acrolein-induced MMP14 expression and activity in mucin production in COPD.
0.205415
Taken together, these findings implicate acrolein-induced <span class="gene" id="19661247-14-58-63">MMP14</span> expression and activity in mucin production in <span class="disease" id="19661247-14-111-115">COPD</span>.
CTD_human
2
0
Therapeutic
C0017638
Glioma
disease
glioma
8743
TNFSF10
TRAIL
CTD_human
16,820,965
The results of the present study show that the anti-diabetic drug troglitazone sensitizes human glioma and neuroblastoma cells to TRAIL-induced apoptosis.
0.22409
The results of the present study show that the anti-diabetic drug troglitazone sensitizes human <span class="disease" id="16820965-3-96-102">glioma</span> and neuroblastoma cells to <span class="gene" id="16820965-3-130-135">TRAIL</span>-induced apoptosis.
CTD_human
1
0
Biomarker
C0026764
Multiple Myeloma
disease
myeloma
598
BCL2L1
Bcl-XL
CTD_human
12,429,644
MM cells express multiple Bcl-2 family members, including Bcl-2, Bcl-XL, and Mcl-1, which are thought to play a key role in the survival and drug resistance of myeloma.
0.204931
MM cells express multiple Bcl-2 family members, including Bcl-2, <span class="gene" id="12429644-2-65-71">Bcl-XL</span>, and Mcl-1, which are thought to play a key role in the survival and drug resistance of <span class="disease" id="12429644-2-160-167">myeloma</span>.
CTD_human
null
null
Negative
MESH:C535918
null
null
cat eye syndrome
51816
null
adenosine deaminase 2
null
28,024,309
Deficiency of adenosine deaminase 2 (ADA2) due to homozygous or compound heterozygous mutations in the cat eye syndrome chromosome region, candidate 1 (CECR1) gene causes an autoimmune phenotype with systemic vasculitis affecting the skin, inner organs, and the central nervous system.
null
null
null
null
null
Negative
MESH:D007027
null
null
Hypothalamic
18976
null
pro-opiomelanocortin
null
28,190,775
Hypothalamic pro-opiomelanocortin (POMC) neurons regulate energy and glucose metabolism.
null
null
null
4
0
Biomarker
C0003873
Rheumatoid Arthritis
disease
RA
7124
TNF
TNF
CTD_human
2,001,072
TNF thus appears an additional component of RA subclinical alveolitis in RA, but its prognostic value and its precise role in lung damage remain to be determined.
0.50559
<span class="gene" id="2001072-7-0-3">TNF</span> thus appears an additional component of <span class="disease" id="2001072-7-44-46">RA</span> subclinical alveolitis in <span class="disease" id="2001072-7-73-75">RA</span>, but its prognostic value and its precise role in lung damage remain to be determined.
CTD_human
1
0
Biomarker
C0038358
Gastric ulcer
disease
gastric ulcer healing
7422
VEGFA
vascular endothelial growth factor
CTD_human
11,353,854
Platelets modulate gastric ulcer healing: role of endostatin and vascular endothelial growth factor release.
0.207114
Platelets modulate <span class="disease" id="11353854-0-19-40">gastric ulcer healing</span>: role of endostatin and <span class="gene" id="11353854-0-65-99">vascular endothelial growth factor</span> release.
CTD_human
2
0
Biomarker
C0007131
Non-Small Cell Lung Carcinoma
disease
non-small-cell lung carcinoma
4780
NFE2L2
NRF2
CTD_human
22,684,020
Regulatory role of KEAP1 and NRF2 in PPAR? expression and chemoresistance in human non-small-cell lung carcinoma cells.
0.207143
Regulatory role of KEAP1 and <span class="gene" id="22684020-0-29-33">NRF2</span> in PPAR&gamma; expression and chemoresistance in human <span class="disease" id="22684020-0-83-112">non-small-cell lung carcinoma</span> cells.
CTD_human
1
1
Biomarker
C0011860
Diabetes Mellitus, Non-Insulin-Dependent
disease
T2DM
11132
CAPN10
CAPN-10
CTD_human
23,349,674
Chronic exposure to iAs seems to be a risk factor for T2DM in humans through the reduction of beta-cell function, with an enhanced effect seen in the presence of the at-risk genotype of SNP-43 in CAPN-10.
0.328526
Chronic exposure to iAs seems to be a risk factor for <span class="disease" id="23349674-10-54-58">T2DM</span> in humans through the reduction of beta-cell function, with an enhanced effect seen in the presence of the at-risk genotype of SNP-43 in <span class="gene" id="23349674-10-196-203">CAPN-10</span>.
CTD_human
null
null
Negative
MESH:C535970
null
null
morning glory syndrome
5362
null
OCT
null
28,040,527
PURPOSE: To evaluate the radial peripapillary capillary network with optical coherence tomography angiography (angio-OCT) in morning glory syndrome (MGS), optic disc colobomas and optic disc pits, and to explore possible correlations between the neural vascular structure and the pathogenesis of congenital optic disc anomalies.
null
null
null
1
0
Biomarker
C0001403
Addison Disease
disease
primary adrenal insufficiency
23274
CLEC16A
CLEC16A
CTD_human
18,593,762
Polymorphisms in CLEC16A and CIITA at 16p13 are associated with primary adrenal insufficiency.
0.203506
Polymorphisms in <span class="gene" id="18593762-0-17-24">CLEC16A</span> and CIITA at 16p13 are associated with <span class="disease" id="18593762-0-64-93">primary adrenal insufficiency</span>.
CTD_human
null
null
Negative
MESH:D008107
null
null
liver disease
4938;4939;4940
null
OAS1-3
null
28,139,728
The aim was to analyze the association between 2'5'oligoadenylate synthetase 1,2 and 3 (OAS1-3) and myxovirus resistance proteins 1 (Mx1) polymorphisms and severity of liver disease in human immunodeficiency virus (HIV)/hepatitis C virus (HCV) coinfected patients.
null
null
null
1
0
Biomarker
C0024145
Chilblain lupus 1
disease
chilblain lupus
25939
SAMHD1
SAMHD1
CTD_human
27,566,796
Familial chilblain lupus is a monogenic form of cutaneous lupus erythematosus caused by loss-of-function mutations in the nucleases TREX1 or SAMHD1.
0.4
Familial <span class="disease" id="27566796-1-9-24">chilblain lupus</span> is a monogenic form of cutaneous lupus erythematosus caused by loss-of-function mutations in the nucleases TREX1 or <span class="gene" id="27566796-1-141-147">SAMHD1</span>.
CTD_human;ORPHANET
1
0
Biomarker
C1168401
Squamous cell carcinoma of the head and neck
disease
HNSCC
7157
TP53
TP53
CTD_human
25,086,664
The TP53-3p interaction is specific to chromosome 3p and validates in HNSCC and pan-cancer cohorts.
0.255979
The <span class="gene" id="25086664-4-4-8">TP53</span>-3p interaction is specific to chromosome 3p and validates in <span class="disease" id="25086664-4-70-75">HNSCC</span> and pan-cancer cohorts.
CTD_human
null
null
Negative
MESH:D017827
null
null
Wild type
4854
null
Notch3
null
28,131,704
APPROACH AND RESULTS: Wild type (WT) and Notch3 knockout (Notch3KO) mice were subjected to MI by the ligation of left anterior descending coronary artery (LAD).
null
null
null
null
null
Negative
MESH:D017827
null
null
wild-type
569575
null
Pgr
null
28,111,234
In this study, we examined expression of all transcripts using RNA-Seq in preovulatory follicular cells collected following the final oocyte maturation, but prior to ovulation, from wild-type (WT) or Pgr-KO fish.
null
null
null
8
1
Biomarker
C0001973
Alcoholic Intoxication, Chronic
disease
alcohol dependence
125
ADH1B
ADH1B
CTD_human
16,404,797
The hypothesized mechanism underlying the associations of the ADH1B and ALDH2 polymorphisms with alcohol dependence is that the isoenzymes encoded by these alleles lead to an accumulation of acetaldehyde during alcohol metabolism.
0.509396
The hypothesized mechanism underlying the associations of the <span class="gene" id="16404797-5-62-67">ADH1B</span> and ALDH2 polymorphisms with <span class="disease" id="16404797-5-97-115">alcohol dependence</span> is that the isoenzymes encoded by these alleles lead to an accumulation of acetaldehyde during alcohol metabolism.
CTD_human;PSYGENET
2
0
Biomarker
C0038220
Status Epilepticus
disease
SE
627
BDNF
neurotrophin
CTD_human
8,635,431
These results provide a complete description of changes in mRNA levels of neurotrophins and their receptors in the forebrain after SE and supply additional data supporting the view that neurotrophin gene expression is related to abnormal neuronal activity.
0.280824
These results provide a complete description of changes in mRNA levels of neurotrophins and their receptors in the forebrain after <span class="disease" id="8635431-9-131-133">SE</span> and supply additional data supporting the view that <span class="gene" id="8635431-9-186-198">neurotrophin</span> gene expression is related to abnormal neuronal activity.
CTD_human
null
null
Negative
MESH:D017573
null
null
epithelial membrane antigen
947
null
CD34
null
28,134,725
DFSPs from our tissue archives were screened for tumors with a sclerosing pattern, and then studied with epithelial membrane antigen (EMA), CD34, and elastic tissue staining to investigate whether such stains can differentiate sclerosing DFSP from sclerotic fibroma.
null
null
null
null
null
Negative
MESH:D009336
null
null
tumor necrosis factor a
29260
null
toll-like receptor 4
null
28,061,403
It also significantly restored hippocampal level of reactive oxygen species (ROS), glutathione (GSH), nuclear factor (erythroid-derived 2)-like 2 (Nrf2), activity of catalase and caspase 3, nuclear factor-<kappa>B (NF-kB), toll-like receptor 4 (TLR4), tumor necrosis factor a (TNFa), interleukin-1b (IL-1b), neural cell adhesion molecule (NCAM), glial fibrillary acidic protein (GFAP), cathepsin D, and heme oxygenase 1 (HO-1).
null
null
null
null
null
Negative
MESH:C564589
null
null
SMC
18538
null
PCNA
null
28,025,048
This effect was mainly due to a substantial reduction the number of cells that stained positive for SMC (a-SMA) and PCNA in the vessel walls.
null
null
null
3
7
Biomarker
C1840333
Barakat syndrome
disease
HDR-syndrome
2625
GATA3
GATA-3
CTD_human
20,006,695
Based on observations that mutations of GATA-3 are responsible for the HDR-syndrome (hypoparathyroidism, deafness, renal defects) and that GATA-transcription factors have an important role to play in inner ear development, we hypothesized that these transcription factors may be involved in regulatory changes of prestin transcription.
0.689066
Based on observations that mutations of <span class="gene" id="20006695-1-40-46">GATA-3</span> are responsible for the <span class="disease" id="20006695-1-71-83">HDR-syndrome</span> (hypoparathyroidism, deafness, renal defects) and that GATA-transcription factors have an important role to play in inner ear development, we hypothesized that these transcription factors may be involved in regulatory changes of prestin transcription.
CTD_human;ORPHANET;UNIPROT
2
0
Biomarker
C0034069
Pulmonary Fibrosis
disease
lung fibrosis
6356
CCL11
CCL11
CTD_human
16,314,464
Together, these data suggest that CCL11 and CCR3 are important in the pulmonary recruitment of granulocytes and play significant pathogenic roles in blm-induced lung fibrosis.
0.203008
Together, these data suggest that <span class="gene" id="16314464-10-34-39">CCL11</span> and CCR3 are important in the pulmonary recruitment of granulocytes and play significant pathogenic roles in blm-induced <span class="disease" id="16314464-10-161-174">lung fibrosis</span>.
CTD_human
64
0
Therapeutic
C0002871
Anemia
disease
anemia
2056
EPO
erythropoietin
CTD_human
10,713,657
In this study, we demonstrated that anemia in cancer patients was caused by blunted erythropoietin response, rather than its quantitative deficiency.
0.24092
In this study, we demonstrated that <span class="disease" id="10713657-11-36-42">anemia</span> in cancer patients was caused by blunted <span class="gene" id="10713657-11-84-98">erythropoietin</span> response, rather than its quantitative deficiency.
CTD_human
null
null
Negative
MESH:D003643
null
null
deaths
84357
null
rUK
null
28,062,643
Between the 1950s and 2000s, 'excess deaths' by age 80 per 100 000 population associated with living in Scotland grew from 4341 to 7203 compared with rUK, and from 4132 to 8828 compared with rWE.
null
null
null
null
null
Negative
MESH:D009369
null
null
tumor
12165
null
BMP9
null
28,142,420
BMP9 is upregulated in the RIP1-Tag2 murine model of vascular invasive carcinoma; treatment with a murine version of dalantercept (RAP-041) can inhibit tumor growth.
null
null
null
null
null
Negative
MESH:D000230
null
null
adenocarcinomas
107029
null
ME2
null
28,174,172
The chromosome 18q21 deletion in nearly one third of pancreatic adenocarcinomas eliminates not only the tumor suppressor SMAD4, but also neighboring genes with important cellular roles, such as ME2 This is tolerated by cancer cells only because ME2 has a functionally redundant paralog, ME3, elsewhere in the genome.
null
null
null
null
null
Negative
MESH:C562719
null
null
TN
2064
null
Her-2
null
28,105,662
This study aims to determine if preoperative MRI is associated with reduced IBTR rates in the longer term and evaluate IBTR rates of a high risk (TN and Her-2 positive) subgroup in those receiving MRI or not.
null
null
null
6
0
Biomarker
C0004153
Atherosclerosis
disease
atherosclerosis
5444
PON1
PON1
CTD_human
21,629,682
Human serum paraoxonase-1 (PON1) prevents oxidation of low density lipoprotein cholesterol (LDL-C) and hydrolyzes the oxidized form, therefore preventing the development of atherosclerosis.
0.286433
Human serum <span class="gene" id="21629682-1-12-25">paraoxonase-1</span> (<span class="gene" id="21629682-1-27-31">PON1</span>) prevents oxidation of low density lipoprotein cholesterol (LDL-C) and hydrolyzes the oxidized form, therefore preventing the development of <span class="disease" id="21629682-1-173-188">atherosclerosis</span>.
CTD_human
3
0
Biomarker
C0020429
Hyperalgesia
phenotype
hyperalgesia
5581
PRKCE
PKCepsilon
CTD_human
12,582,831
Injection of 5- and 12-lipoxygenase produced hyperalgesia that was not antagonized by inhibitors of PKA, PKCepsilon or MAPK.These findings suggest that: (1). lipoxygenase products of arachidonic acid function as second messengers in the peripheral hyperalgesia induced by agents that act directly on primary afferent nociceptors (epinephrine and prostaglandin E(2)), (2). products of the 5-lipoxygenase and 12-lipoxygenase pathway are involved in this function, and (3). these lipoxygenase products contribute to hyperalgesia at or downstream of protein kinase A and PKCepsilon.
0.202733
Injection of 5- and 12-lipoxygenase produced <span class="disease" id="12582831-5-45-57">hyperalgesia</span> that was not antagonized by inhibitors of PKA, <span class="gene" id="12582831-5-105-115">PKCepsilon</span> or MAPK.These findings suggest that: (1). lipoxygenase products of arachidonic acid function as second messengers in the peripheral <span class="disease" id="12582831-5-248-260">hyperalgesia</span> induced by agents that act directly on primary afferent nociceptors (epinephrine and prostaglandin E(2)), (2). products of the 5-lipoxygenase and 12-lipoxygenase pathway are involved in this function, and (3). these lipoxygenase products contribute to <span class="disease" id="12582831-5-513-525">hyperalgesia</span> at or downstream of protein kinase A and <span class="gene" id="12582831-5-567-577">PKCepsilon</span>.
CTD_human
1
0
Biomarker
C0029463
Osteosarcoma
disease
osteosarcoma
4015
LOX
LOX
CTD_human
23,886,186
Interactive effect of bisphenol A (BPA) exposure with -22G/C polymorphism in LOX gene on the risk of osteosarcoma.
0.201099
Interactive effect of bisphenol A (BPA) exposure with -22G/C polymorphism in <span class="gene" id="23886186-0-77-80">LOX</span> gene on the risk of <span class="disease" id="23886186-0-101-113">osteosarcoma</span>.
CTD_human
1
0
Biomarker
C0598608
Hyperhomocysteinemia
disease
hHcy
834
CASP1
caspase 1
CTD_human
22,647,887
Pathologically, hHcys-associated albuminuria, foot process effacement of podocytes, loss of podocyte slit diaphragm molecules, and glomerulosclerosis at the late stage were significantly improved by local ASC gene silencing or by caspase 1 inhibition.
0.2
Pathologically, <span class="disease" id="22647887-7-16-20">hHcy</span>s-associated albuminuria, foot process effacement of podocytes, loss of podocyte slit diaphragm molecules, and glomerulosclerosis at the late stage were significantly improved by local ASC gene silencing or by <span class="gene" id="22647887-7-230-239">caspase 1</span> inhibition.
CTD_human
1
0
Biomarker
C0028754
Obesity
disease
obesity
10135
NAMPT
NAMPT
CTD_human
23,834,033
Elevated microRNA-34a in obesity reduces NAD+ levels and SIRT1 activity by directly targeting NAMPT.
0.213265
Elevated microRNA-34a in <span class="disease" id="23834033-0-25-32">obesity</span> reduces NAD+ levels and SIRT1 activity by directly targeting <span class="gene" id="23834033-0-94-99">NAMPT</span>.
CTD_human
2
0
Biomarker
C3714756
Intellectual Disability
group
intellectual disability
26040
SETBP1
SETBP1
CTD_human
25,217,958
These genetic changes include haploinsufficiency of SETBP1 associated with intellectual disability and loss of expressive language and truncations of ZMYND11 in individuals with autism, aggression and complex neuropsychiatric features.
0.400275
These genetic changes include haploinsufficiency of <span class="gene" id="25217958-6-52-58">SETBP1</span> associated with <span class="disease" id="25217958-6-75-98">intellectual disability</span> and loss of expressive language and truncations of ZMYND11 in individuals with autism, aggression and complex neuropsychiatric features.
CTD_human;HPO