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Runtime error
base_dir=data/interpro_motif/IPR000048 | |
python src/crawler/sequence/download_uniprot_seq.py \ | |
-f $base_dir/failed.txt \ | |
-o $base_dir/unfold_fasta | |
base_dir=data/interpro_domain | |
python src/crawler/sequence/download_uniprot_seq.py \ | |
-f $base_dir/unfolded_proteins.txt \ | |
-o $base_dir/unfold_fasta | |
base_dir=data/interpro_motif | |
for dir in "$base_dir"/IPR*; do | |
if [ -d "$dir" ]; then | |
inter_id=$(basename "$dir") | |
python src/crawler/sequence/download_uniprot_seq.py -f $base_dir/$inter_id/failed.txt -o data/motif_unfold | |
fi | |
done | |