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05ddcd91_t__PDPK1_017__ENST00000561962___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-017 (ENST00000561962) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2556896-2584064;t=ENST00000561962 | 31/1438042988924.75_20150728002308-00234-ip-10-236-191-2_443674410_0.json |
05ddcd91_t__PDPK1_017__ENST00000561962___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-017 (ENST00000561962) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2556896-2584064;t=ENST00000561962 | 31/1438042988924.75_20150728002308-00234-ip-10-236-191-2_443674410_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-001 [Transcript ID] ENST00000326317 [bp] 2784 [Protein] 502aa [Translation ID] ENSP00000314606 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11770 [UniProt] P51688 [RefSeq] NM_000199 NP_000190 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-004 [Transcript ID] ENST00000570923 [bp] 1546 [Protein] 274aa [Translation ID] ENSP00000458200 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L0M2 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-012 [Transcript ID] ENST00000576856 [bp] 818 [Protein] 67aa [Translation ID] ENSP00000460720 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L3T3 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-017 [Transcript ID] ENST00000570427 [bp] 583 [Protein] 188aa [Translation ID] ENSP00000459765 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L2L4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-015 [Transcript ID] ENST00000572257 [bp] 581 [Protein] 194aa [Translation ID] ENSP00000461827 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3NI22 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-005 [Transcript ID] ENST00000576707 [bp] 546 [Protein] 110aa [Translation ID] ENSP00000461128 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L4B7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-003 [Transcript ID] ENST00000573150 [bp] 2612 [Protein] 227aa [Translation ID] ENSP00000459280 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L207 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-016 [Transcript ID] ENST00000574505 [bp] 587 [Protein] 106aa [Translation ID] ENSP00000459708 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L2I6 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-010 [Transcript ID] ENST00000576941 [bp] 578 [Protein] 108aa [Translation ID] ENSP00000461160 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L4C9 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-011 [Transcript ID] ENST00000572208 [bp] 584 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-013 [Transcript ID] ENST00000575484 [bp] 565 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-014 [Transcript ID] ENST00000571156 [bp] 554 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-002 [Transcript ID] ENST00000575282 [bp] 5562 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-006 [Transcript ID] ENST00000571075 [bp] 578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-008 [Transcript ID] ENST00000571675 [bp] 571 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-007 [Transcript ID] ENST00000575188 [bp] 553 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
a87f2e9e_pt__SGSH_004__ENST00000570923___Flags | [Name] SGSH-009 [Transcript ID] ENST00000571051 [bp] 538 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-001 [Transcript ID] ENST00000326317 [bp] 2784 [Protein] 502aa [Translation ID] ENSP00000314606 [CCDS] CCDS11770 [UniProt] P51688 [RefSeq] NM_000199 NP_000190 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-004 [Transcript ID] ENST00000570923 [bp] 1546 [Protein] 274aa [Translation ID] ENSP00000458200 [CCDS] - [UniProt] I3L0M2 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-012 [Transcript ID] ENST00000576856 [bp] 818 [Protein] 67aa [Translation ID] ENSP00000460720 [CCDS] - [UniProt] I3L3T3 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-017 [Transcript ID] ENST00000570427 [bp] 583 [Protein] 188aa [Translation ID] ENSP00000459765 [CCDS] - [UniProt] I3L2L4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-015 [Transcript ID] ENST00000572257 [bp] 581 [Protein] 194aa [Translation ID] ENSP00000461827 [CCDS] - [UniProt] I3NI22 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-005 [Transcript ID] ENST00000576707 [bp] 546 [Protein] 110aa [Translation ID] ENSP00000461128 [CCDS] - [UniProt] I3L4B7 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-003 [Transcript ID] ENST00000573150 [bp] 2612 [Protein] 227aa [Translation ID] ENSP00000459280 [CCDS] - [UniProt] I3L207 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-016 [Transcript ID] ENST00000574505 [bp] 587 [Protein] 106aa [Translation ID] ENSP00000459708 [CCDS] - [UniProt] I3L2I6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-010 [Transcript ID] ENST00000576941 [bp] 578 [Protein] 108aa [Translation ID] ENSP00000461160 [CCDS] - [UniProt] I3L4C9 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-011 [Transcript ID] ENST00000572208 [bp] 584 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-013 [Transcript ID] ENST00000575484 [bp] 565 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-014 [Transcript ID] ENST00000571156 [bp] 554 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-002 [Transcript ID] ENST00000575282 [bp] 5562 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-006 [Transcript ID] ENST00000571075 [bp] 578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-008 [Transcript ID] ENST00000571675 [bp] 571 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-007 [Transcript ID] ENST00000575188 [bp] 553 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
de7f6f9d_pt__SGSH_004__ENST00000570923___Biotype | [Name] SGSH-009 [Transcript ID] ENST00000571051 [bp] 538 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SGSH-004 (ENST00000570923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000181523;r=17:80211534-80220338;t=ENST00000570923 | 31/1438042988924.75_20150728002308-00100-ip-10-236-191-2_425711852_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-001 [Transcript ID] ENST00000436311 [bp] 2615 [Protein] 740aa [Translation ID] ENSP00000404376 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A024RCS3 Q9UER7 [RefSeq] NM_001141969 NM_001141970 NM_001350 NP_001135441 NP_001135442 NP_001341 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-002 [Transcript ID] ENST00000455860 [bp] 2608 [Protein] 740aa [Translation ID] ENSP00000410772 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A024RCS3 Q9UER7 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-208 [Transcript ID] ENST00000616312 [bp] 2464 [Protein] 688aa [Translation ID] ENSP00000483517 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9UER7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-207 [Transcript ID] ENST00000612868 [bp] 2357 [Protein] 665aa [Translation ID] ENSP00000479172 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9UER7 [RefSeq] NM_001254717 NP_001241646 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-005 [Transcript ID] ENST00000419855 [bp] 751 [Protein] 130aa [Translation ID] ENSP00000397612 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-007 [Transcript ID] ENST00000440500 [bp] 702 [Protein] 178aa [Translation ID] ENSP00000403986 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-011 [Transcript ID] ENST00000421874 [bp] 371 [Protein] 48aa [Translation ID] ENSP00000387575 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-010 [Transcript ID] ENST00000472399 [bp] 847 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-009 [Transcript ID] ENST00000486470 [bp] 817 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-004 [Transcript ID] ENST00000487360 [bp] 756 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-006 [Transcript ID] ENST00000480469 [bp] 580 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-008 [Transcript ID] ENST00000469010 [bp] 641 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
7c1fb1d7_pt__DAXX_008__ENST00000469010___Flags | [Name] DAXX-003 [Transcript ID] ENST00000491696 [bp] 463 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
be09dd94___Gene__HPSE__ENSG00000173083___Flags | [Name] HPSE-001 [Transcript ID] ENST00000405413 [bp] 4652 [Protein] 543aa [Translation ID] ENSP00000384262 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3602 [UniProt] Q9Y251 [RefSeq] NM_006665 NP_006656 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
be09dd94___Gene__HPSE__ENSG00000173083___Flags | [Name] HPSE-002 [Transcript ID] ENST00000311412 [bp] 4615 [Protein] 543aa [Translation ID] ENSP00000308107 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3602 [UniProt] Q9Y251 [RefSeq] NM_001098540 NP_001092010 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
be09dd94___Gene__HPSE__ENSG00000173083___Flags | [Name] HPSE-005 [Transcript ID] ENST00000512196 [bp] 1571 [Protein] 469aa [Translation ID] ENSP00000423265 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54774 [UniProt] Q9Y251 [RefSeq] NM_001166498 NP_001159970 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
be09dd94___Gene__HPSE__ENSG00000173083___Flags | [Name] HPSE-003 [Transcript ID] ENST00000513463 [bp] 1458 [Protein] 485aa [Translation ID] ENSP00000421365 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56337 [UniProt] Q9Y251 [RefSeq] NM_001199830 NP_001186759 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
be09dd94___Gene__HPSE__ENSG00000173083___Flags | [Name] HPSE-006 [Transcript ID] ENST00000509906 [bp] 1678 [Protein] 380aa [Translation ID] ENSP00000421038 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q9Y251 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
be09dd94___Gene__HPSE__ENSG00000173083___Flags | [Name] HPSE-004 [Transcript ID] ENST00000507150 [bp] 1624 [Protein] 226aa [Translation ID] ENSP00000426139 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RHG4 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
be09dd94___Gene__HPSE__ENSG00000173083___Flags | [Name] HPSE-007 [Transcript ID] ENST00000508891 [bp] 1450 [Protein] 168aa [Translation ID] ENSP00000421827 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RAQ1 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
644c0c4d__SYNGAP1_005__ENST00000495633___Biotype | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: SYNGAP1-005 (ENST00000495633) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000197283;r=6:33438472-33440575;t=ENST00000495633 | 31/1438042988924.75_20150728002308-00312-ip-10-236-191-2_429139428_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-001 [Transcript ID] ENST00000301071 [bp] 1915 [Protein] 451aa [Translation ID] ENSP00000301071 [CCDS] CCDS8781 [UniProt] Q71U36 [RefSeq] NM_006009 NP_006000 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-002 [Transcript ID] ENST00000295766 [bp] 1887 [Protein] 451aa [Translation ID] ENSP00000439020 [CCDS] CCDS58227 [UniProt] Q71U36 [RefSeq] NM_001270399 NP_001257328 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-006 [Transcript ID] ENST00000550767 [bp] 1384 [Protein] 416aa [Translation ID] ENSP00000446637 [CCDS] CCDS58226 [UniProt] Q71U36 [RefSeq] NM_001270400 NP_001257329 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-011 [Transcript ID] ENST00000546918 [bp] 984 [Protein] 231aa [Translation ID] ENSP00000446613 [CCDS] - [UniProt] F8W0F6 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-009 [Transcript ID] ENST00000547939 [bp] 946 [Protein] 219aa [Translation ID] ENSP00000450268 [CCDS] - [UniProt] F8VQQ4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-010 [Transcript ID] ENST00000550811 [bp] 650 [Protein] 26aa [Translation ID] ENSP00000449016 [CCDS] - [UniProt] F8VXZ7 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-008 [Transcript ID] ENST00000552924 [bp] 628 [Protein] 112aa [Translation ID] ENSP00000448725 [CCDS] - [UniProt] F8VRZ4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-014 [Transcript ID] ENST00000550254 [bp] 696 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
7b23961f___TUBA1A_011__ENST00000546918___Biotype | [Name] TUBA1A-015 [Transcript ID] ENST00000548363 [bp] 673 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TUBA1A-011 (ENST00000546918) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000167552;r=12:49185621-49189066;t=ENST00000546918 | 31/1438042988924.75_20150728002308-00109-ip-10-236-191-2_425116745_0.json |
bf1eb27f___CDKN1A_001__ENST00000244741___Biotype | [Name] CDKN1A-201 [Transcript ID] ENST00000405375 [bp] 2267 [Protein] 164aa [Translation ID] ENSP00000384849 [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] NM_001220778 NP_001207707 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
bf1eb27f___CDKN1A_001__ENST00000244741___Biotype | [Name] CDKN1A-001 [Transcript ID] ENST00000244741 [bp] 2180 [Protein] 164aa [Translation ID] ENSP00000244741 [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] NM_000389 NP_000380 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
bf1eb27f___CDKN1A_001__ENST00000244741___Biotype | [Name] CDKN1A-202 [Transcript ID] ENST00000448526 [bp] 2104 [Protein] 164aa [Translation ID] ENSP00000409259 [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] NM_078467 NP_510867 [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
bf1eb27f___CDKN1A_001__ENST00000244741___Biotype | [Name] CDKN1A-203 [Transcript ID] ENST00000615513 [bp] 2102 [Protein] 164aa [Translation ID] ENSP00000482768 [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] NM_001220777 NP_001207706 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
bf1eb27f___CDKN1A_001__ENST00000244741___Biotype | [Name] CDKN1A-002 [Transcript ID] ENST00000373711 [bp] 793 [Protein] 164aa [Translation ID] ENSP00000362815 [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
bf1eb27f___CDKN1A_001__ENST00000244741___Biotype | [Name] CDKN1A-004 [Transcript ID] ENST00000478800 [bp] 616 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
bf1eb27f___CDKN1A_001__ENST00000244741___Biotype | [Name] CDKN1A-005 [Transcript ID] ENST00000459970 [bp] 604 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
bf1eb27f___CDKN1A_001__ENST00000244741___Biotype | [Name] CDKN1A-003 [Transcript ID] ENST00000462537 [bp] 553 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-001 [Transcript ID] ENST00000276440 [bp] 10075 [Protein] 1870aa [Translation ID] ENSP00000276440 [CCDS] CCDS6047 [UniProt] Q9H7D0 [RefSeq] NM_024940 NP_079216 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-004 [Transcript ID] ENST00000444569 [bp] 5335 [Protein] 1090aa [Translation ID] ENSP00000414125 [CCDS] - [UniProt] H0Y7N4 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-003 [Transcript ID] ENST00000481100 [bp] 2166 [Protein] 350aa [Translation ID] ENSP00000429737 [CCDS] - [UniProt] Q9H7D0 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-002 [Transcript ID] ENST00000410074 [bp] 786 [Protein] 83aa [Translation ID] ENSP00000387036 [CCDS] - [UniProt] B9A015 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-015 [Transcript ID] ENST00000467709 [bp] 4844 [Protein] 138aa [Translation ID] ENSP00000428479 [CCDS] - [UniProt] H0YB14 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-014 [Transcript ID] ENST00000521405 [bp] 1836 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-012 [Transcript ID] ENST00000479547 [bp] 1042 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-008 [Transcript ID] ENST00000481728 [bp] 780 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-005 [Transcript ID] ENST00000495236 [bp] 594 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-011 [Transcript ID] ENST00000463457 [bp] 459 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-007 [Transcript ID] ENST00000487948 [bp] 429 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
ddce8670__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-006 [Transcript ID] ENST00000478099 [bp] 288 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External references - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042989018.48_20150728002309-00233-ip-10-236-191-2_443658284_0.json |
558d3d63_t__CPT1B_007__ENST00000460853___Flags | [Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-007 (ENST00000460853) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000460853 | 31/1438042989018.48_20150728002309-00083-ip-10-236-191-2_428415683_0.json |
558d3d63_t__CPT1B_007__ENST00000460853___Flags | [Name] CPT1B-005 [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-007 (ENST00000460853) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000460853 | 31/1438042989018.48_20150728002309-00083-ip-10-236-191-2_428415683_0.json |
558d3d63_t__CPT1B_007__ENST00000460853___Flags | [Name] CPT1B-004 [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-007 (ENST00000460853) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000460853 | 31/1438042989018.48_20150728002309-00083-ip-10-236-191-2_428415683_0.json |
558d3d63_t__CPT1B_007__ENST00000460853___Flags | [Name] CPT1B-201 [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-007 (ENST00000460853) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000460853 | 31/1438042989018.48_20150728002309-00083-ip-10-236-191-2_428415683_0.json |
558d3d63_t__CPT1B_007__ENST00000460853___Flags | [Name] CPT1B-202 [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-007 (ENST00000460853) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000460853 | 31/1438042989018.48_20150728002309-00083-ip-10-236-191-2_428415683_0.json |
558d3d63_t__CPT1B_007__ENST00000460853___Flags | [Name] CPT1B-008 [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-007 (ENST00000460853) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000460853 | 31/1438042989018.48_20150728002309-00083-ip-10-236-191-2_428415683_0.json |
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