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3691ef41__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-005 [Transcript ID] ENST00000495236 [bp] 594 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042988924.75_20150728002308-00230-ip-10-236-191-2_422765430_0.json |
3691ef41__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-011 [Transcript ID] ENST00000463457 [bp] 459 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042988924.75_20150728002308-00230-ip-10-236-191-2_422765430_0.json |
3691ef41__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-007 [Transcript ID] ENST00000487948 [bp] 429 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042988924.75_20150728002308-00230-ip-10-236-191-2_422765430_0.json |
3691ef41__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-006 [Transcript ID] ENST00000478099 [bp] 288 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000147459;r=8:25042238-25275598 | 31/1438042988924.75_20150728002308-00230-ip-10-236-191-2_422765430_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-001 [Transcript ID] ENST00000404625 [bp] 1527 [Protein] 212aa [Translation ID] ENSP00000385675 [CCDS] CCDS5375 [UniProt] P05231 Q75MH2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-201 [Transcript ID] ENST00000258743 [bp] 1182 [Protein] 212aa [Translation ID] ENSP00000258743 [CCDS] CCDS5375 [UniProt] P05231 Q75MH2 [RefSeq] NM_000600 NP_000591 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-004 [Transcript ID] ENST00000407492 [bp] 926 [Protein] 136aa [Translation ID] ENSP00000385043 [CCDS] - [UniProt] B5MC21 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-005 [Transcript ID] ENST00000401630 [bp] 765 [Protein] 189aa [Translation ID] ENSP00000384928 [CCDS] - [UniProt] B5MCZ3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-006 [Transcript ID] ENST00000406575 [bp] 649 [Protein] 198aa [Translation ID] ENSP00000385227 [CCDS] - [UniProt] B5MC14 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-002 [Transcript ID] ENST00000426291 [bp] 574 [Protein] 152aa [Translation ID] ENSP00000405150 [CCDS] - [UniProt] C9J5B0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-003 [Transcript ID] ENST00000401651 [bp] 539 [Protein] 122aa [Translation ID] ENSP00000385718 [CCDS] - [UniProt] B4DNV3 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-008 [Transcript ID] ENST00000485300 [bp] 985 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
61b92ca5____Gene__IL6__ENSG00000136244___Biotype | [Name] IL6-007 [Transcript ID] ENST00000464710 [bp] 582 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: IL6 (ENSG00000136244) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000136244;r=7:22765503-22771621 | 31/1438042989018.48_20150728002309-00239-ip-10-236-191-2_428716574_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-001 [Transcript ID] ENST00000297130 [bp] 3445 [Protein] 251aa [Translation ID] ENSP00000297130 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4309 [UniProt] Q8TDC0 [RefSeq] NM_001122853 NM_133371 NP_001116325 NP_588612 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-002 [Transcript ID] ENST00000517768 [bp] 1451 [Protein] 251aa [Translation ID] ENSP00000428815 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4309 [UniProt] Q8TDC0 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-201 [Transcript ID] ENST00000615557 [bp] 1031 [Protein] 87aa [Translation ID] ENSP00000478375 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q8TDC0 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-007 [Transcript ID] ENST00000520112 [bp] 605 [Protein] 159aa [Translation ID] ENSP00000429439 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RII7 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-008 [Transcript ID] ENST00000523553 [bp] 576 [Protein] 104aa [Translation ID] ENSP00000430913 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YC50 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-004 [Transcript ID] ENST00000456566 [bp] 3290 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-006 [Transcript ID] ENST00000521300 [bp] 665 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-005 [Transcript ID] ENST00000524256 [bp] 493 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
992779d5__Gene__MYOZ3__ENSG00000164591___Flags | [Name] MYOZ3-009 [Transcript ID] ENST00000517861 [bp] 487 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: MYOZ3 (ENSG00000164591) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000164591;r=5:150660874-150679365 | 31/1438042988924.75_20150728002308-00022-ip-10-236-191-2_420997289_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
a7f4ebd6_t__PDPK1_007__ENST00000492021___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-007 (ENST00000492021) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000492021 | 31/1438042988924.75_20150728002308-00007-ip-10-236-191-2_438070359_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000436311 [bp] 2615 [Protein] 740aa [Translation ID] ENSP00000404376 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A024RCS3 Q9UER7 [RefSeq] NM_001141969 NM_001141970 NM_001350 NP_001135441 NP_001135442 NP_001341 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | DAXX-001 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000455860 [bp] 2608 [Protein] 740aa [Translation ID] ENSP00000410772 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A024RCS3 Q9UER7 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | DAXX-002 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000616312 [bp] 2464 [Protein] 688aa [Translation ID] ENSP00000483517 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9UER7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | DAXX-208 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000612868 [bp] 2357 [Protein] 665aa [Translation ID] ENSP00000479172 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9UER7 [RefSeq] NM_001254717 NP_001241646 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | DAXX-207 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000419855 [bp] 751 [Protein] 130aa [Translation ID] ENSP00000397612 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | DAXX-005 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000440500 [bp] 702 [Protein] 178aa [Translation ID] ENSP00000403986 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | DAXX-007 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000421874 [bp] 371 [Protein] 48aa [Translation ID] ENSP00000387575 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | DAXX-011 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000472399 [bp] 847 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | DAXX-010 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000486470 [bp] 817 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | DAXX-009 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000487360 [bp] 756 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | DAXX-004 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000480469 [bp] 580 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | DAXX-006 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000469010 [bp] 641 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | DAXX-008 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
b493957a_pt__DAXX_008__ENST00000469010___Name | [Transcript ID] ENST00000491696 [bp] 463 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | DAXX-003 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DAXX-008 (ENST00000469010) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000227046;r=CHR_HSCHR6_MHC_COX_CTG1:33241270-33242066;t=ENST00000469010 | 31/1438042988924.75_20150728002308-00242-ip-10-236-191-2_438360781_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
a67d5713_t__PDPK1_015__ENST00000566659___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-015 (ENST00000566659) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000566659 | 31/1438042989018.48_20150728002309-00214-ip-10-236-191-2_428938367_0.json |
c6a7fab2_t__SPRTN_006__ENST00000469904___Flags | [Name] SPRTN-002 [Transcript ID] ENST00000391858 [bp] 3559 [Protein] 250aa [Translation ID] ENSP00000375731 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS31054 [UniProt] Q9H040 [RefSeq] NM_001010984 NP_001010984 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SPRTN-006 (ENST00000469904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000010072;r=1:231347677-231352754;t=ENST00000469904 | 31/1438042988924.75_20150728002308-00332-ip-10-236-191-2_427750597_0.json |
c6a7fab2_t__SPRTN_006__ENST00000469904___Flags | [Name] SPRTN-001 [Transcript ID] ENST00000295050 [bp] 3468 [Protein] 489aa [Translation ID] ENSP00000295050 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1594 [UniProt] A0A024R3U2 Q9H040 [RefSeq] NM_032018 NP_114407 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SPRTN-006 (ENST00000469904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000010072;r=1:231347677-231352754;t=ENST00000469904 | 31/1438042988924.75_20150728002308-00332-ip-10-236-191-2_427750597_0.json |
c6a7fab2_t__SPRTN_006__ENST00000469904___Flags | [Name] SPRTN-003 [Transcript ID] ENST00000008440 [bp] 1667 [Protein] 207aa [Translation ID] ENSP00000008440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58066 [UniProt] Q9H040 [RefSeq] NM_001261462 NP_001248391 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SPRTN-006 (ENST00000469904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000010072;r=1:231347677-231352754;t=ENST00000469904 | 31/1438042988924.75_20150728002308-00332-ip-10-236-191-2_427750597_0.json |
c6a7fab2_t__SPRTN_006__ENST00000469904___Flags | [Name] SPRTN-004 [Transcript ID] ENST00000366644 [bp] 795 [Protein] 187aa [Translation ID] ENSP00000355604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B1AKT1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SPRTN-006 (ENST00000469904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000010072;r=1:231347677-231352754;t=ENST00000469904 | 31/1438042988924.75_20150728002308-00332-ip-10-236-191-2_427750597_0.json |
c6a7fab2_t__SPRTN_006__ENST00000469904___Flags | [Name] SPRTN-006 [Transcript ID] ENST00000469904 [bp] 662 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SPRTN-006 (ENST00000469904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000010072;r=1:231347677-231352754;t=ENST00000469904 | 31/1438042988924.75_20150728002308-00332-ip-10-236-191-2_427750597_0.json |
c6a7fab2_t__SPRTN_006__ENST00000469904___Flags | [Name] SPRTN-005 [Transcript ID] ENST00000492437 [bp] 603 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SPRTN-006 (ENST00000469904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000010072;r=1:231347677-231352754;t=ENST00000469904 | 31/1438042988924.75_20150728002308-00332-ip-10-236-191-2_427750597_0.json |
abfff751___Gene__HPSE__ENSG00000173083___Biotype | [Name] HPSE-001 [Transcript ID] ENST00000405413 [bp] 4652 [Protein] 543aa [Translation ID] ENSP00000384262 [CCDS] CCDS3602 [UniProt] Q9Y251 [RefSeq] NM_006665 NP_006656 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
abfff751___Gene__HPSE__ENSG00000173083___Biotype | [Name] HPSE-002 [Transcript ID] ENST00000311412 [bp] 4615 [Protein] 543aa [Translation ID] ENSP00000308107 [CCDS] CCDS3602 [UniProt] Q9Y251 [RefSeq] NM_001098540 NP_001092010 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
abfff751___Gene__HPSE__ENSG00000173083___Biotype | [Name] HPSE-005 [Transcript ID] ENST00000512196 [bp] 1571 [Protein] 469aa [Translation ID] ENSP00000423265 [CCDS] CCDS54774 [UniProt] Q9Y251 [RefSeq] NM_001166498 NP_001159970 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
abfff751___Gene__HPSE__ENSG00000173083___Biotype | [Name] HPSE-003 [Transcript ID] ENST00000513463 [bp] 1458 [Protein] 485aa [Translation ID] ENSP00000421365 [CCDS] CCDS56337 [UniProt] Q9Y251 [RefSeq] NM_001199830 NP_001186759 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
abfff751___Gene__HPSE__ENSG00000173083___Biotype | [Name] HPSE-006 [Transcript ID] ENST00000509906 [bp] 1678 [Protein] 380aa [Translation ID] ENSP00000421038 [CCDS] - [UniProt] Q9Y251 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
abfff751___Gene__HPSE__ENSG00000173083___Biotype | [Name] HPSE-004 [Transcript ID] ENST00000507150 [bp] 1624 [Protein] 226aa [Translation ID] ENSP00000426139 [CCDS] - [UniProt] D6RHG4 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
abfff751___Gene__HPSE__ENSG00000173083___Biotype | [Name] HPSE-007 [Transcript ID] ENST00000508891 [bp] 1450 [Protein] 168aa [Translation ID] ENSP00000421827 [CCDS] - [UniProt] D6RAQ1 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: HPSE (ENSG00000173083) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000173083;r=4:83292461-83335153 | 31/1438042986357.49_20150728002306-00100-ip-10-236-191-2_440018063_0.json |
578bd37e___CDKN1A_001__ENST00000244741___Flags | [Name] CDKN1A-201 [Transcript ID] ENST00000405375 [bp] 2267 [Protein] 164aa [Translation ID] ENSP00000384849 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] NM_001220778 NP_001207707 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
578bd37e___CDKN1A_001__ENST00000244741___Flags | [Name] CDKN1A-001 [Transcript ID] ENST00000244741 [bp] 2180 [Protein] 164aa [Translation ID] ENSP00000244741 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] NM_000389 NP_000380 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
578bd37e___CDKN1A_001__ENST00000244741___Flags | [Name] CDKN1A-202 [Transcript ID] ENST00000448526 [bp] 2104 [Protein] 164aa [Translation ID] ENSP00000409259 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] NM_078467 NP_510867 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
578bd37e___CDKN1A_001__ENST00000244741___Flags | [Name] CDKN1A-203 [Transcript ID] ENST00000615513 [bp] 2102 [Protein] 164aa [Translation ID] ENSP00000482768 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] NM_001220777 NP_001207706 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
578bd37e___CDKN1A_001__ENST00000244741___Flags | [Name] CDKN1A-002 [Transcript ID] ENST00000373711 [bp] 793 [Protein] 164aa [Translation ID] ENSP00000362815 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4824 [UniProt] A0A024RCX5 P38936 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
578bd37e___CDKN1A_001__ENST00000244741___Flags | [Name] CDKN1A-004 [Transcript ID] ENST00000478800 [bp] 616 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
578bd37e___CDKN1A_001__ENST00000244741___Flags | [Name] CDKN1A-005 [Transcript ID] ENST00000459970 [bp] 604 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
578bd37e___CDKN1A_001__ENST00000244741___Flags | [Name] CDKN1A-003 [Transcript ID] ENST00000462537 [bp] 553 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: CDKN1A-001 (ENST00000244741) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000124762;r=6:36678658-36687339;t=ENST00000244741 | 31/1438042988924.75_20150728002308-00319-ip-10-236-191-2_429146940_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
e5dbff08__Gene__PDPK1__ENSG00000140992___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000389224 | 31/1438042988924.75_20150728002308-00186-ip-10-236-191-2_426480370_0.json |
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