Spaces:
Sleeping
Sleeping
fix the code
Browse files
app.py
CHANGED
@@ -16,6 +16,72 @@ chart = data_frames["chart"]
|
|
16 |
medication = data_frames["medication"]
|
17 |
note = data_frames["note"]
|
18 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
19 |
|
20 |
sequential_file = pd.read_csv("./sequential.csv")
|
21 |
|
|
|
16 |
medication = data_frames["medication"]
|
17 |
note = data_frames["note"]
|
18 |
|
19 |
+
df["ADMITTIME"]=pd.to_datetime(df["ADMITTIME"], format= '%Y-%m-%d %H:%M:%S')
|
20 |
+
df["ADMITTIME"]=df["ADMITTIME"].dt.strftime('%Y-%m-%d')
|
21 |
+
df["DISCHTIME"]=pd.to_datetime(df["DISCHTIME"], format= '%Y-%m-%d %H:%M:%S')
|
22 |
+
df["DISCHTIME"]=df["DISCHTIME"].dt.strftime('%Y-%m-%d')
|
23 |
+
df["DOB"]=pd.to_datetime(df["DOB"], format= '%Y-%m-%d %H:%M:%S')
|
24 |
+
df["DOB"]=df["DOB"].dt.strftime('%Y-%m-%d')
|
25 |
+
|
26 |
+
df["ADMITTIME"] = pd.to_datetime(df["ADMITTIME"], format = '%Y-%m-%d')
|
27 |
+
df["DISCHTIME"] = pd.to_datetime(df["DISCHTIME"], format = '%Y-%m-%d')
|
28 |
+
df["DOB"] = pd.to_datetime(df["DOB"], format = '%Y-%m-%d')
|
29 |
+
|
30 |
+
|
31 |
+
def cal_los(row):
|
32 |
+
admit = pd.to_datetime(row["ADMITTIME"])
|
33 |
+
disch = pd.to_datetime(row["DISCHTIME"])
|
34 |
+
los = (disch - admit).days
|
35 |
+
return los
|
36 |
+
|
37 |
+
df["LOS"] = df.apply(cal_los, axis=1)
|
38 |
+
|
39 |
+
chart["DATETIME"]=pd.to_datetime(chart["DATETIME"], format= '%Y-%m-%d %H:%M:%S')
|
40 |
+
chart["DATETIME"]=chart["DATETIME"].dt.strftime('%Y-%m-%d')
|
41 |
+
chart["DATETIME"] = pd.to_datetime(chart["DATETIME"], format = '%Y-%m-%d')
|
42 |
+
chart1 = chart.sort_values(by=["SUBJECT_ID", "DATETIME"])
|
43 |
+
|
44 |
+
medication["STARTDATE"]=pd.to_datetime(medication["STARTDATE"], format= '%Y-%m-%d %H:%M:%S')
|
45 |
+
medication["STARTDATE"]=medication["STARTDATE"].dt.strftime('%Y-%m-%d')
|
46 |
+
|
47 |
+
medication["ENDDATE"]=pd.to_datetime(medication["ENDDATE"], format= '%Y-%m-%d %H:%M:%S')
|
48 |
+
medication["ENDDATE"]=medication["ENDDATE"].dt.strftime('%Y-%m-%d')
|
49 |
+
|
50 |
+
|
51 |
+
medication["STARTDATE"] = pd.to_datetime(medication["STARTDATE"], format = '%Y-%m-%d')
|
52 |
+
medication["ENDDATE"] = pd.to_datetime(medication["ENDDATE"], format = '%Y-%m-%d')
|
53 |
+
|
54 |
+
|
55 |
+
def cal_duration(row):
|
56 |
+
admit = pd.to_datetime(row["STARTDATE"])
|
57 |
+
disch = pd.to_datetime(row["ENDDATE"])
|
58 |
+
dur = (disch - admit).days
|
59 |
+
return dur
|
60 |
+
|
61 |
+
medication["duration"] = medication.apply(cal_duration, axis = 1)
|
62 |
+
|
63 |
+
note["DATETIME"]=pd.to_datetime(note["DATETIME"], format= '%Y-%m-%d %H:%M:%S')
|
64 |
+
note["DATETIME"]=note["DATETIME"].dt.strftime('%Y-%m-%d')
|
65 |
+
note["DATETIME"] = pd.to_datetime(note["DATETIME"], format = '%Y-%m-%d')
|
66 |
+
|
67 |
+
|
68 |
+
df1_df = df.loc[df["HADM_ID"]==2222]
|
69 |
+
df1_diagnoses = diagnoses.loc[diagnoses["HADM_ID"]==2222]
|
70 |
+
df1_procedure = procedure.loc[procedure["HADM_ID"]==2222]
|
71 |
+
df1_chart = chart.loc[chart["HADM_ID"]==2222]
|
72 |
+
df1_medication = medication.loc[medication["HADM_ID"]==2222]
|
73 |
+
df1_note = note.loc[note["HADM_ID"]==2222]
|
74 |
+
|
75 |
+
df2_df = df.loc[df["HADM_ID"]==8888]
|
76 |
+
df2_diagnoses = diagnoses.loc[diagnoses["HADM_ID"]==8888]
|
77 |
+
df2_procedure = procedure.loc[procedure["HADM_ID"]==8888]
|
78 |
+
df2_chart = chart.loc[chart["HADM_ID"]==8888]
|
79 |
+
df2_medication = medication.loc[medication["HADM_ID"]==8888]
|
80 |
+
df2_note = note.loc[note["HADM_ID"]==8888]
|
81 |
+
|
82 |
+
|
83 |
+
|
84 |
+
|
85 |
|
86 |
sequential_file = pd.read_csv("./sequential.csv")
|
87 |
|