Update app.py
Browse files
app.py
CHANGED
@@ -140,7 +140,7 @@ def handle_name(name=None, pdb_input=None, model_version="ESM3"):
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return f'{pdb_name}-Dyna1{"" if model_version == "ESM3" else "-ESM2"}'
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@spaces.GPU(duration=300)
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def run_model(model_version='ESM2', seq_input=None, struct_input=None, sequence_id=None):
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if model_version == "ESM3":
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logits = model((seq_input, struct_input), sequence_id)
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else:
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@@ -159,11 +159,11 @@ def predict_dynamics(sequence=None, pdb_input=None, chain_id='A', use_pdb_seq=Fa
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base_name = handle_name(name, pdb_input, model_version)
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if model_version == "ESM3":
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model = ESM_model(method='esm3')
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model.load_state_dict(torch.load('Dyna-1/model/weights/dyna1.pt'
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else:
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model = ESM_model(method='esm2', nheads=8, nlayers=12, layer=30).to(DEVICE)
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model.load_state_dict(torch.load('Dyna-1/model/weights/dyna1-esm2.pt'
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model.eval()
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@@ -194,7 +194,7 @@ def predict_dynamics(sequence=None, pdb_input=None, chain_id='A', use_pdb_seq=Fa
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if not (sequence or (pdb_input and model_version == "ESM3")):
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raise ValueError('Please provide a sequence' + (' or structure input' if model_version == "ESM3" else ''))
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logits = run_model(model_version, seq_input, struct_input, sequence_id)
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probabilities = utils.prob_adjusted(logits).cpu().detach().numpy()
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return f'{pdb_name}-Dyna1{"" if model_version == "ESM3" else "-ESM2"}'
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@spaces.GPU(duration=300)
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+
def run_model(model, model_version='ESM2', seq_input=None, struct_input=None, sequence_id=None):
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if model_version == "ESM3":
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logits = model((seq_input, struct_input), sequence_id)
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else:
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base_name = handle_name(name, pdb_input, model_version)
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if model_version == "ESM3":
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model = ESM_model(method='esm3')
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model.load_state_dict(torch.load('Dyna-1/model/weights/dyna1.pt'), strict=False)
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else:
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model = ESM_model(method='esm2', nheads=8, nlayers=12, layer=30).to(DEVICE)
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model.load_state_dict(torch.load('Dyna-1/model/weights/dyna1-esm2.pt'), strict=False)
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model.eval()
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if not (sequence or (pdb_input and model_version == "ESM3")):
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raise ValueError('Please provide a sequence' + (' or structure input' if model_version == "ESM3" else ''))
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logits = run_model(model, model_version, seq_input, struct_input, sequence_id)
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probabilities = utils.prob_adjusted(logits).cpu().detach().numpy()
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