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Upload model.py
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model.py
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import os
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from transformers import AutoTokenizer, AutoModelForTokenClassification, pipeline
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# Safe writable cache dirs in Hugging Face Spaces
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os.environ["TRANSFORMERS_CACHE"] = "/tmp/hf_cache"
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os.environ["HF_HOME"] = "/tmp/hf_home"
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os.environ["HF_HUB_CACHE"] = "/tmp/hf_hub"
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HF_TOKEN = os.getenv("HF_TOKEN")
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MODEL_ID = "TypicaAI/magbert-ner"
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import os
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#from transformers import AutoTokenizer, AutoModelForTokenClassification, pipeline
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from transformers import pipeline
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from huggingface_hub import login
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# Safe writable cache dirs in Hugging Face Spaces move to space settings vars`
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#os.environ["TRANSFORMERS_CACHE"] = "/tmp/hf_cache"
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#os.environ["HF_HOME"] = "/tmp/hf_home"
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#os.environ["HF_HUB_CACHE"] = "/tmp/hf_hub"
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MODEL_ID = "TypicaAI/magbert-ner"
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#HF_TOKEN = os.getenv("HF_TOKEN")
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#tokenizer = AutoTokenizer.from_pretrained(MODEL_ID, token=HF_TOKEN)
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#model = AutoModelForTokenClassification.from_pretrained(MODEL_ID, token=HF_TOKEN)
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#ner_pipeline = pipeline("ner", model=model, tokenizer=tokenizer, aggregation_strategy="first")
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# Authenticate using the secret `HFTOKEN`
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def authenticate_with_token():
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"""Authenticate with the Hugging Face API using the HFTOKEN secret."""
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hf_token = os.getenv("HF_TOKEN") # Retrieve the token from environment variables
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if not hf_token:
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raise ValueError("HF_TOKEN is not set. Please add it to the Secrets in your Space settings.")
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login(token=hf_token)
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def load_healthcare_ner_pipeline():
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"""Load the Hugging Face pipeline for Healthcare NER."""
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global ner_pipeline
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if ner_pipeline is None:
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# Authenticate and initialize pipeline
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authenticate_with_token()
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ner_pipeline = pipeline(
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"token-classification",
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model=MODEL_ID,
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aggregation_strategy="first" # Groups B- and I- tokens into entities
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)
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return ner_pipeline
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# Initialize global pipeline
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ner_pipeline = load_healthcare_ner_pipeline()
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