Attempt to fix, fingers crossed
Browse files- callbackmanager.py +141 -109
callbackmanager.py
CHANGED
@@ -183,8 +183,8 @@ def process_fhir_bundle(fhir_bundle):
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patients.append(resource)
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return patients
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def
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"""
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# Safely extract name components
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official_name = next(
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(n for n in patient.get("name", []) if n.get("use") == "official"),
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@@ -204,75 +204,32 @@ def create_patient_stripe(patient):
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state = address.get("state", "")
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postal_code = address.get("postalCode", "")
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status = gr.Dropdown(
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choices=["Pending", "Reviewed", "Approved", "Rejected"],
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value="Pending",
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label="Review Status"
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)
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with gr.Column(scale=1):
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generate_btn = gr.Button("Generate Report", visible=False)
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probability = gr.Label("Risk Probability", visible=False)
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documents_btn = gr.Button("View Documents", visible=True)
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doc_output = gr.JSON(label="Patient Documents", visible=False)
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# Dynamic visibility and document handling
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def update_components(selected_status):
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visible = selected_status in ["Reviewed", "Approved"]
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return (
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{"visible": visible}, # For generate_btn
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{"visible": visible, "value": {"Low": 0.3, "Medium": 0.6, "High": 0.9}.get(selected_status, 0.5)} # For probability
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)
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def show_documents(patient_id):
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docs = CALLBACK_MANAGER.get_patient_documents(patient_id)
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return {"value": docs, "visible": True} # For doc_output
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status.change(
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update_components,
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inputs=status,
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outputs=[generate_btn, probability]
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)
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documents_btn.click(
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fn=show_documents,
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inputs=patient_id_box,
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outputs=doc_output
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)
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return stripe
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def update_patient_display(patient_data_json):
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"""
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Update the patient display with parsed FHIR data
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Args:
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patient_data_json: JSON string of FHIR patient data
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Returns:
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Tuple of updates for the UI components
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"""
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try:
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# Handle the case where patient_data_json is an error message
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if isinstance(patient_data_json, str) and (patient_data_json.startswith("Not authenticated") or patient_data_json.startswith("Failed")):
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logger.warning(f"Error in patient data: {patient_data_json}")
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return
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[],
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None
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# Parse JSON if it's a string
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if isinstance(patient_data_json, str):
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@@ -280,72 +237,147 @@ def update_patient_display(patient_data_json):
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fhir_bundle = json.loads(patient_data_json)
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except json.JSONDecodeError as e:
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logger.error(f"JSON decode error: {str(e)} - Data: {patient_data_json[:100]}...")
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return
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[],
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None
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else:
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fhir_bundle = patient_data_json
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# Safety check
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if not isinstance(fhir_bundle, dict):
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logger.error(f"Unexpected data type: {type(fhir_bundle)}")
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return
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[],
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None
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patients = process_fhir_bundle(fhir_bundle)
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if not patients:
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logger.warning("No patients found in data")
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return
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[],
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None
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#
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has_prev = any(link.get("relation") == "previous" for link in fhir_bundle.get("link", []))
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has_next = any(link.get("relation") == "next" for link in fhir_bundle.get("link", []))
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# Create
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for patient in patients:
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try:
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except Exception as e:
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logger.error(f"Error
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# Continue with other patients if one fails
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logger.info(f"
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except Exception as e:
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error_msg = f"Error loading patient data: {str(e)}\n{traceback.format_exc()}"
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logger.error(error_msg)
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return
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[],
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None
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def generate_pdf_from_form(
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first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
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@@ -497,12 +529,12 @@ with gr.Blocks() as demo:
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patient_data_state = gr.State()
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# Pagination controls
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with gr.Row(
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prev_btn = gr.Button("Previous Page")
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next_btn = gr.Button("Next Page")
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#
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# Metadata display
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metadata_md = gr.Markdown()
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patients.append(resource)
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return patients
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def create_patient_stripe_data(patient):
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"""Extract data from patient to create a stripe (without components or event handlers)"""
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# Safely extract name components
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official_name = next(
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(n for n in patient.get("name", []) if n.get("use") == "official"),
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state = address.get("state", "")
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postal_code = address.get("postalCode", "")
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# Return structured data that can be used to display the patient info
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return {
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"name": f"{given_names} {family_name}",
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"gender": gender,
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"birth_date": birth_date,
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"patient_id": patient_id,
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"city": city,
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"state": state,
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"postal_code": postal_code
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}
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def update_patient_display(patient_data_json):
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"""
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Update the patient display with parsed FHIR data.
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Returns processed data without trying to update UI components directly.
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"""
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try:
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# Handle the case where patient_data_json is an error message
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if isinstance(patient_data_json, str) and (patient_data_json.startswith("Not authenticated") or patient_data_json.startswith("Failed")):
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logger.warning(f"Error in patient data: {patient_data_json}")
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return {
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"has_pagination": False,
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"patients": [],
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"metadata": f"Error: {patient_data_json}",
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"raw_data": None
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}
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# Parse JSON if it's a string
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if isinstance(patient_data_json, str):
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fhir_bundle = json.loads(patient_data_json)
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except json.JSONDecodeError as e:
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logger.error(f"JSON decode error: {str(e)} - Data: {patient_data_json[:100]}...")
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return {
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"has_pagination": False,
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"patients": [],
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"metadata": f"Invalid JSON data: {str(e)}",
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"raw_data": None
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}
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else:
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fhir_bundle = patient_data_json
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# Safety check
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if not isinstance(fhir_bundle, dict):
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logger.error(f"Unexpected data type: {type(fhir_bundle)}")
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return {
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"has_pagination": False,
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"patients": [],
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"metadata": f"Expected dictionary but got {type(fhir_bundle)}",
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"raw_data": None
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}
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patients = process_fhir_bundle(fhir_bundle)
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if not patients:
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logger.warning("No patients found in data")
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return {
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"has_pagination": False,
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"patients": [],
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"metadata": "No patients found in the data",
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"raw_data": None
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}
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# Check pagination
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has_prev = any(link.get("relation") == "previous" for link in fhir_bundle.get("link", []))
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has_next = any(link.get("relation") == "next" for link in fhir_bundle.get("link", []))
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# Create patient data for display
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patient_data_list = []
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for patient in patients:
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try:
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patient_data = create_patient_stripe_data(patient)
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patient_data_list.append(patient_data)
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except Exception as e:
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logger.error(f"Error processing patient data: {str(e)}")
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# Continue with other patients if one fails
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logger.info(f"Processed {len(patient_data_list)} patients successfully")
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# Generate metadata string
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metadata_text = f"""
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**Bundle Metadata**
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Type: {fhir_bundle.get('type', 'Unknown')}
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Total Patients: {fhir_bundle.get('total', len(patients))}
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Last Updated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
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"""
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return {
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"has_pagination": has_prev or has_next,
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"patients": patient_data_list,
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"metadata": metadata_text,
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"raw_data": {"patients": patients, "bundle": fhir_bundle}
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}
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except Exception as e:
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error_msg = f"Error loading patient data: {str(e)}\n{traceback.format_exc()}"
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logger.error(error_msg)
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return {
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"has_pagination": False,
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"patients": [],
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"metadata": error_msg,
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"raw_data": None
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}
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def fetch_and_display_patients():
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try:
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logger.info("Fetching patient data...")
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# Get data from API
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data = CALLBACK_MANAGER.get_patient_data()
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logger.info(f"Received patient data: {data[:100]}..." if isinstance(data, str) else "Received non-string data")
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# Handle case when the data is just an error message
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if data.startswith("Not authenticated") or data.startswith("Failed"):
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logger.warning(f"Authentication issue: {data}")
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processed_data = {
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"has_pagination": False,
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"patients": [],
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"metadata": f"Error: {data}",
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"raw_data": None
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}
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else:
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# Process the results
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try:
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processed_data = update_patient_display(data)
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logger.info("Successfully processed patient display data")
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except Exception as e:
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logger.error(f"Error in update_patient_display: {str(e)}\n{traceback.format_exc()}")
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processed_data = {
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"has_pagination": False,
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"patients": [],
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"metadata": f"Error processing patient data: {str(e)}",
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"raw_data": None
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}
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# Return the raw JSON and processed data
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return [
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data, # For the raw JSON output
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processed_data["has_pagination"], # Update pagination visibility
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format_patient_html(processed_data["patients"]), # HTML for patients
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processed_data["metadata"], # Metadata text
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processed_data["raw_data"] # State data
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]
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except Exception as e:
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error_msg = f"Unexpected error fetching patient data: {str(e)}\n{traceback.format_exc()}"
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logger.error(error_msg)
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return [
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f"Error: {str(e)}",
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False,
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"",
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error_msg,
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None
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]
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def format_patient_html(patients):
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"""Format patient list as HTML for display in markdown component"""
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if not patients:
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return "No patients found."
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html = ""
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for i, patient in enumerate(patients):
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html += f"""
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<div style="padding: 10px; margin: 10px 0; border: 1px solid #ccc; border-radius: 5px; background-color: #f9f9f9;">
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<h3>{patient['name']}</h3>
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<p>{patient['gender']} | Born: {patient['birth_date']}</p>
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<p>{patient['city']}, {patient['state']} {patient['postal_code']}</p>
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<p>ID: {patient['patient_id']}</p>
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<hr/>
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<div style="display: flex; justify-content: space-between;">
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<span>Status: Pending Review</span>
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<button onclick="alert('Documents for patient {patient['patient_id']}')">View Documents</button>
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</div>
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</div>
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"""
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return html
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def generate_pdf_from_form(
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first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
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patient_data_state = gr.State()
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# Pagination controls
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with gr.Row() as pagination_row:
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prev_btn = gr.Button("Previous Page", visible=False)
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next_btn = gr.Button("Next Page", visible=False)
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# Replace patient stripes with a single markdown component
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patient_display = gr.HTML("No patient data loaded.")
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# Metadata display
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metadata_md = gr.Markdown()
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