fix requirements.txt

requirements.txt

@@ -1,220 +0,0 @@
-<<<<<<< HEAD
-=======
-absl-py==2.1.0
-aiofiles==23.2.1
-aiohappyeyeballs==2.4.3
-aiohttp==3.10.10
-aiosignal==1.3.1
-annotated-types==0.7.0
-anyio==4.6.2.post1
-argon2-cffi==23.1.0
-argon2-cffi-bindings==21.2.0
-arrow==1.3.0
-asttokens==2.4.1
-async-lru==2.0.4
-async-timeout==4.0.3
-attrs==24.2.0
-babel==2.16.0
-beautifulsoup4==4.12.3
-bio==1.7.1
-biopython==1.84
-biothings-client==0.3.1
-biotite==0.41.2
-bleach==6.2.0
-cachetools==5.5.0
-certifi==2024.8.30
-cffi==1.17.1
-charset-normalizer==3.4.0
-click==8.1.7
-comm==0.2.2
-debugpy==1.8.7
-decorator==5.1.1
-defusedxml==0.7.1
-docker-pycreds==0.4.0
-exceptiongroup==1.2.2
-executing==2.1.0
-fastapi==0.115.4
-fastjsonschema==2.20.0
-fastpdb==1.3.1
-ffmpy==0.4.0
-filelock==3.16.1
-fqdn==1.5.1
-frozenlist==1.5.0
-fsspec==2024.10.0
-gcsfs==2024.10.0
-gitdb==4.0.11
-GitPython==3.1.43
-google-api-core==2.22.0
-google-auth==2.35.0
-google-auth-oauthlib==1.2.1
-google-cloud-core==2.4.1
-google-cloud-storage==2.18.2
-google-crc32c==1.6.0
-google-resumable-media==2.7.2
-googleapis-common-protos==1.65.0
-gprofiler-official==1.0.0
-gradio==5.5.0
-gradio_client==1.4.2
-gradio_molecule3d==0.0.6
-grpcio==1.67.1
-h11==0.14.0
-httpcore==1.0.6
-httpx==0.27.2
-huggingface-hub
-idna==3.10
-ipykernel==6.29.5
-ipython==8.29.0
-ipywidgets==8.1.5
-isoduration==20.11.0
-jedi==0.19.1
-Jinja2==3.1.4
-joblib==1.4.2
-json5==0.9.25
-jsonpointer==3.0.0
-jsonschema==4.23.0
-jsonschema-specifications==2024.10.1
-jupyter-events==0.10.0
-jupyter-lsp==2.2.5
-jupyter_client==8.6.3
-jupyter_core==5.7.2
-jupyter_server==2.14.2
-jupyter_server_terminals==0.5.3
-jupyterlab==4.3.0
-jupyterlab_pygments==0.3.0
-jupyterlab_server==2.27.3
-jupyterlab_widgets==3.0.13
-lightning==2.4.0
-lightning-utilities==0.11.8
-Markdown==3.7
-markdown-it-py==3.0.0
-MarkupSafe==2.1.5
-matplotlib-inline==0.1.7
-mdurl==0.1.2
-mistune==3.0.2
-mpmath==1.3.0
-msgpack==1.1.0
-multidict==6.1.0
-mygene==3.2.2
-nbclient==0.10.0
-nbconvert==7.16.4
-nbformat==5.10.4
-nest-asyncio==1.6.0
-networkx==3.4.2
-notebook_shim==0.2.4
-numpy==1.26.4
-nvidia-cublas-cu12==12.4.5.8
-nvidia-cuda-cupti-cu12==12.4.127
-nvidia-cuda-nvrtc-cu12==12.4.127
-nvidia-cuda-runtime-cu12==12.4.127
-nvidia-cudnn-cu12==9.1.0.70
-nvidia-cufft-cu12==11.2.1.3
-nvidia-curand-cu12==10.3.5.147
-nvidia-cusolver-cu12==11.6.1.9
-nvidia-cusparse-cu12==12.3.1.170
-nvidia-nccl-cu12==2.21.5
-nvidia-nvjitlink-cu12==12.4.127
-nvidia-nvtx-cu12==12.4.127
-oauthlib==3.2.2
-orjson==3.10.11
-overrides==7.7.0
-packaging==24.1
-pandas==2.2.3
-pandocfilters==1.5.1
-parso==0.8.4
-pexpect==4.9.0
-pillow==11.0.0
-pinder==0.4.1
-platformdirs==4.3.6
-plotly==5.24.1
-pooch==1.8.2
-prometheus_client==0.21.0
-prompt_toolkit==3.0.48
-propcache==0.2.0
-proto-plus==1.25.0
-protobuf==5.28.3
-psutil==6.1.0
-ptyprocess==0.7.0
-pure_eval==0.2.3
-pyarrow==18.0.0
-pyasn1==0.6.1
-pyasn1_modules==0.4.1
-pycparser==2.22
-pydantic==2.9.2
-pydantic_core==2.23.4
-pydub==0.25.1
-pyg-lib==0.4.0
-Pygments==2.18.0
-pyparsing==3.2.0
-python-dateutil==2.9.0.post0
-python-dotenv==1.0.1
-python-json-logger==2.0.7
-python-multipart==0.0.12
-pytorch-lightning==2.4.0
-pytz==2024.2
-PyYAML==6.0.2
-pyzmq==26.2.0
-referencing==0.35.1
-requests==2.32.3
-requests-oauthlib==2.0.0
-rfc3339-validator==0.1.4
-rfc3986-validator==0.1.1
-rich==13.9.4
-rootutils==1.0.7
-rpds-py==0.20.1
-rsa==4.9
-ruff==0.7.2
-safehttpx==0.1.1
-scikit-learn==1.5.2
-scipy==1.14.1
-semantic-version==2.10.0
-Send2Trash==1.8.3
-sentry-sdk==2.18.0
-setproctitle==1.3.3
-shellingham==1.5.4
-six==1.16.0
-smmap==5.0.1
-sniffio==1.3.1
-soupsieve==2.6
-stack-data==0.6.3
-starlette==0.41.2
-sympy==1.13.1
-tabulate==0.9.0
-tenacity==9.0.0
-tensorboard==2.18.0
-tensorboard-data-server==0.7.2
-tensorboardX==2.6.2.2
-terminado==0.18.1
-threadpoolctl==3.5.0
-tinycss2==1.4.0
-tomli==2.0.2
-tomlkit==0.12.0
-torch==2.5.1
-torch-geometric==2.6.1
-torch_cluster==1.6.3
-torch_scatter==2.1.2
-torch_sparse==0.6.18
-torch_spline_conv==1.2.2
-torchmetrics==1.5.1
-torchtyping==0.1.5
-tornado==6.4.1
-tqdm==4.66.6
-traitlets==5.14.3
-triton==3.1.0
-typeguard==2.13.3
-typer==0.13.0
-types-python-dateutil==2.9.0.20241003
-typing_extensions==4.12.2
-tzdata==2024.2
-uri-template==1.3.0
-urllib3==2.2.3
-uvicorn==0.32.0
-wandb==0.18.5
-wcwidth==0.2.13
-webcolors==24.8.0
-webencodings==0.5.1
-websocket-client==1.8.0
-websockets==12.0
-Werkzeug==3.1.2
-widgetsnbextension==4.0.13
-yarl==1.17.1
->>>>>>> d425d10542df2402cdd4ab7574f47bcb40a07cef