mgyigit commited on
Commit
bf8b026
·
1 Parent(s): e8bb309

Update app.py

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Files changed (1) hide show
  1. app.py +3 -6
app.py CHANGED
@@ -16,12 +16,10 @@ class DrugGENConfig:
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  submodel='DrugGEN'
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  inference_model="experiments/models/DrugGEN/"
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  sample_num=100
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- disable_correction=False # corresponds to correct=True in old config
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  # Data configuration
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- inf_smiles='data/chembl_test.smi' # corresponds to inf_raw_file in old config
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  train_smiles='data/chembl_train.smi'
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- train_drug_smiles='data/akt1_train.smi'
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  inf_batch_size=1
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  mol_data_dir='data'
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  features=False
@@ -43,21 +41,20 @@ class DrugGENConfig:
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  class DrugGENAKT1Config(DrugGENConfig):
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  submodel='DrugGEN'
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  inference_model="experiments/models/DrugGEN-AKT1/"
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- train_drug_smiles='data/akt1_train.smi'
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  max_atom=45
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  class DrugGENCDK2Config(DrugGENConfig):
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  submodel='DrugGEN'
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  inference_model="experiments/models/DrugGEN-CDK2/"
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- train_drug_smiles='data/cdk2_train.smi'
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  max_atom=38
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  class NoTargetConfig(DrugGENConfig):
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  submodel="NoTarget"
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  inference_model="experiments/models/NoTarget/"
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- train_drug_smiles='data/chembl_train.smi' # No specific target, use general ChEMBL data
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  model_configs = {
 
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  submodel='DrugGEN'
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  inference_model="experiments/models/DrugGEN/"
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  sample_num=100
 
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  # Data configuration
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+ inf_smiles='data/chembl_test.smi'
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  train_smiles='data/chembl_train.smi'
 
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  inf_batch_size=1
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  mol_data_dir='data'
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  features=False
 
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  class DrugGENAKT1Config(DrugGENConfig):
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  submodel='DrugGEN'
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  inference_model="experiments/models/DrugGEN-AKT1/"
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+ train_drug_smiles='./data/akt1_train.smi'
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  max_atom=45
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  class DrugGENCDK2Config(DrugGENConfig):
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  submodel='DrugGEN'
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  inference_model="experiments/models/DrugGEN-CDK2/"
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+ train_drug_smiles='./data/cdk2_train.smi'
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  max_atom=38
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  class NoTargetConfig(DrugGENConfig):
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  submodel="NoTarget"
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  inference_model="experiments/models/NoTarget/"
 
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  model_configs = {