fatmacankara commited on
Commit
674e20c
·
1 Parent(s): e6d21ab

Update code/alphafold_featureVector.py

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Files changed (1) hide show
  1. code/alphafold_featureVector.py +5 -2
code/alphafold_featureVector.py CHANGED
@@ -34,14 +34,17 @@ def getModelInfo(uniprotID, varPos, wt, models_we_need, path_to_output_files ):
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  for mod in models_we_need:
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  st.write(f"AF-{uniprotID}-F{mod}-model_v4.pdb.gz")
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  try:
 
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  pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures", filename=f"AF-{uniprotID}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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- st.write(pdb_path)
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  except u.EntryNotFoundError:
 
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  pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures2", filename=f"AF-{uniprotID}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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  st.write(pdb_path)
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  except u.EntryNotFoundError:
 
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  pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures3", filename=f"AF-{uniprotID}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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-
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  sasa_val = freesasa(pdb_path, path_to_output_files, uniprotID, mod, varPos, wt)
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  newCol = {}
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  coordDict = {}
 
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  for mod in models_we_need:
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  st.write(f"AF-{uniprotID}-F{mod}-model_v4.pdb.gz")
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  try:
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+ st.write('take1')
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  pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures", filename=f"AF-{uniprotID}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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+
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  except u.EntryNotFoundError:
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+ st.write('take2')
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  pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures2", filename=f"AF-{uniprotID}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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  st.write(pdb_path)
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  except u.EntryNotFoundError:
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+ st.write('take3')
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  pdb_path = hf_hub_download(repo_id="HuBioDataLab/AlphafoldStructures3", filename=f"AF-{uniprotID}-F{mod}-model_v4.pdb.gz",repo_type = 'dataset')
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+
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  sasa_val = freesasa(pdb_path, path_to_output_files, uniprotID, mod, varPos, wt)
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  newCol = {}
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  coordDict = {}