ArneBinder's picture
update from https://github.com/ArneBinder/pie-document-level/pull/397
ced4316 verified
import json
import os
from dataclasses import asdict, dataclass
from pathlib import Path
from typing import Any
from jsonschema import validate
# TODO: load from file
schema = {
"title": "RawPaper",
"type": "object",
"properties": {
"paper_uuid": {"type": "string"},
"name": {"type": "string"},
"collection_id": {"type": "string"},
"collection_acronym": {"type": "string"},
"volume_id": {"type": "string"},
"booktitle": {"type": "string"},
"paper_id": {"type": "integer"},
"year": {"type": ["integer", "null"]},
"paper_title": {"type": "string"},
"authors": {
"type": "array",
"items": {
"type": "object",
"items": {
"first": {"type": ["string", "null"]},
"last": {"type": ["string", "null"]},
},
},
},
"abstract": {"type": ["string", "null"]},
"url": {"type": "string"},
"bibkey": {"type": ["string", "null"]},
"doi": {"type": ["string", "null"]},
"fulltext": {
"type": ["object", "null"],
"patternProperties": {"^.*$": {"type": "array", "items": {"type": "string"}}},
},
},
}
assert isinstance(schema, dict)
@dataclass
class RawPaper:
paper_uuid: str
name: str
collection_id: str
collection_acronym: str
volume_id: str
booktitle: str
paper_id: int
year: int | None
paper_title: str
authors: list[dict[str, str | None]]
abstract: str | None
url: str | None
bibkey: str
doi: str | None
fulltext: dict[str, list[str]] | None
@classmethod
def load_from_json(cls, fpath: str | Path) -> "RawPaper":
fpath = fpath if not isinstance(fpath, Path) else str(fpath)
# return cls(**sienna.load(fpath))
with open(fpath, "r") as f:
data = cls(**json.load(f))
return data
def get_fname(self) -> str:
return f"{self.name}.json"
def dumps(self) -> dict[str, Any]:
return asdict(self)
def validate(self) -> None:
validate(self.dumps(), schema=schema)
def save(self, odir: str) -> None:
self.validate()
if not os.path.exists(odir):
os.makedirs(odir, exist_ok=True)
opath = os.path.join(odir, self.get_fname())
with open(opath, "w") as f:
f.write(json.dumps(self.dumps(), indent=2))