Update app.py
Browse files
app.py
CHANGED
@@ -1,10 +1,12 @@
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import gradio as gr
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import logging
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logging.basicConfig(level=logging.INFO)
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logger = logging.getLogger(__name__)
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tx_app = None
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def respond(message, chat_history, temperature, max_new_tokens, max_tokens, multi_agent, conversation_state, max_round):
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global tx_app
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@@ -42,7 +44,7 @@ def respond(message, chat_history, temperature, max_new_tokens, max_tokens, mult
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logger.error(f"Respond error: {e}")
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yield chat_history + [("", f"⚠️ Error: {e}")]
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# Define Gradio
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with gr.Blocks(title="TxAgent Biomedical Assistant") as app:
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gr.Markdown("# 🧠 TxAgent Biomedical Assistant")
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@@ -72,16 +74,15 @@ with gr.Blocks(title="TxAgent Biomedical Assistant") as app:
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chatbot
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)
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#
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if __name__ == "__main__":
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import multiprocessing
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multiprocessing.set_start_method("spawn", force=True)
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import torch
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from txagent import TxAgent
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from importlib.resources import files
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logger.info("🔥 Initializing TxAgent
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tool_files = {
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"opentarget": str(files('tooluniverse.data').joinpath('opentarget_tools.json')),
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@@ -90,6 +91,7 @@ if __name__ == "__main__":
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"monarch": str(files('tooluniverse.data').joinpath('monarch_tools.json'))
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}
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tx_app = TxAgent(
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model_name="mims-harvard/TxAgent-T1-Llama-3.1-8B",
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rag_model_name="mims-harvard/ToolRAG-T1-GTE-Qwen2-1.5B",
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@@ -110,5 +112,15 @@ if __name__ == "__main__":
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additional_default_tools=["DirectResponse", "RequireClarification"]
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)
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import gradio as gr
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import logging
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import os
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logging.basicConfig(level=logging.INFO)
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logger = logging.getLogger(__name__)
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tx_app = None
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TOOL_CACHE_PATH = "/home/user/.cache/tool_embeddings_done" # flag file for skip
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def respond(message, chat_history, temperature, max_new_tokens, max_tokens, multi_agent, conversation_state, max_round):
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global tx_app
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logger.error(f"Respond error: {e}")
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yield chat_history + [("", f"⚠️ Error: {e}")]
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# === Define Gradio interface ===
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with gr.Blocks(title="TxAgent Biomedical Assistant") as app:
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gr.Markdown("# 🧠 TxAgent Biomedical Assistant")
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chatbot
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)
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# === Safe model init block for vLLM + Hugging Face ===
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if __name__ == "__main__":
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import multiprocessing
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multiprocessing.set_start_method("spawn", force=True)
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from txagent import TxAgent
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from importlib.resources import files
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logger.info("🔥 Initializing TxAgent inside __main__...")
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tool_files = {
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"opentarget": str(files('tooluniverse.data').joinpath('opentarget_tools.json')),
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"monarch": str(files('tooluniverse.data').joinpath('monarch_tools.json'))
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}
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# Initialize agent
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tx_app = TxAgent(
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model_name="mims-harvard/TxAgent-T1-Llama-3.1-8B",
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rag_model_name="mims-harvard/ToolRAG-T1-GTE-Qwen2-1.5B",
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additional_default_tools=["DirectResponse", "RequireClarification"]
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)
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# ✅ Only do tool embedding the first time
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if not os.path.exists(TOOL_CACHE_PATH):
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logger.info("🔧 First run: running full model + embedding")
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tx_app.init_model() # runs full setup
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os.makedirs(os.path.dirname(TOOL_CACHE_PATH), exist_ok=True)
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with open(TOOL_CACHE_PATH, "w") as f:
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f.write("done")
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else:
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logger.info("⚡️ Skipping tool embedding (cached)...")
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tx_app.init_model(skip_tool_embedding=True) # assumes this param is supported
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logger.info("✅ TxAgent is ready!")
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