morgul10 commited on
Commit
cea3bae
·
verified ·
1 Parent(s): c6923bc

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +9 -0
README.md CHANGED
@@ -35,6 +35,15 @@ Note that targets have missing values. Algorithms should be evaluated only on pr
35
  | Recommended split | scaffold |
36
  | Recommended metric | AUPRC, AUROC |
37
 
 
 
 
 
 
 
 
 
 
38
  ## References
39
  <a id="1">[1]</a>
40
  Ramsundar, Bharath, et al.
 
35
  | Recommended split | scaffold |
36
  | Recommended metric | AUPRC, AUROC |
37
 
38
+ **Warning:** in newer RDKit vesions, 2 molecules from the original dataset are not read correctly due to disallowed
39
+ hypervalent states of some atoms (see [release notes](https://github.com/rdkit/rdkit/releases/tag/Release_2024_09_1)).
40
+ This version of the PCBA dataset contains manual fixes for those molecules, removing additional hydrogens, e.g. `[AlH3] -> [Al]`.
41
+ In OGB scaffold split, used for benchmarking, both molecules are in the training set. Applied mapping is:
42
+ ```
43
+ "CC(=O)O[AlH3]OC(C)=O" -> "CC(=O)O[Al]OC(C)=O"
44
+ "CCCCO[AlH3](OCCCC)OCCCC" -> "CCCCO[Al](OCCCC)OCCCC"
45
+ ```
46
+
47
  ## References
48
  <a id="1">[1]</a>
49
  Ramsundar, Bharath, et al.