Chris Oswald commited on
Commit
3e1c16f
·
1 Parent(s): 69d3d64

testing sequence of images for 3D image data

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Files changed (1) hide show
  1. SPIDER.py +5 -3
SPIDER.py CHANGED
@@ -107,7 +107,7 @@ def standardize_3D_mask(
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  MIN_IVD = 0
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  MAX_IVD = 9
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  DEFAULT_SCAN_TYPES = ['t1', 't2', 't2_SPACE']
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- DEFAULT_RESIZE = (512, 512, 30)
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  DEMO_SUBSET_N = 10
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  _CITATION = """\
@@ -237,8 +237,10 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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  features = datasets.Features({
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  "patient_id": datasets.Value("string"),
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  "scan_type": datasets.Value("string"),
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- "image": datasets.Array3D(shape=self.config.resize_shape, dtype='uint8'),
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- "mask": datasets.Array3D(shape=self.config.resize_shape, dtype='uint8'),
 
 
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  "image_path": datasets.Value("string"),
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  "mask_path": datasets.Value("string"),
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  "metadata": {
 
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  MIN_IVD = 0
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  MAX_IVD = 9
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  DEFAULT_SCAN_TYPES = ['t1', 't2', 't2_SPACE']
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+ DEFAULT_RESIZE = (512, 512)
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  DEMO_SUBSET_N = 10
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  _CITATION = """\
 
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  features = datasets.Features({
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  "patient_id": datasets.Value("string"),
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  "scan_type": datasets.Value("string"),
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+ # "image": datasets.Array3D(shape=self.config.resize_shape, dtype='uint8'),
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+ # "mask": datasets.Array3D(shape=self.config.resize_shape, dtype='uint8'),
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+ "image": datasets.Sequence(datasets.Image()),
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+ "mask": datasets.Sequence(datasets.Image()),
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  "image_path": datasets.Value("string"),
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  "mask_path": datasets.Value("string"),
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  "metadata": {