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/glossary.py
""" | |
======== | |
Glossary | |
======== | |
.. glossary:: | |
along an axis | |
Axes are defined for arrays with more than one dimension. A | |
2-dimensional array has two corresponding axes: the first running | |
vertically downwards across rows (axis 0), and the second running | |
horizontally across columns (axis 1). | |
Many operation can take place along one of these axes. For example, | |
we can sum each row of an array, in which case we operate along | |
columns, or axis 1:: | |
>>> x = np.arange(12).reshape((3,4)) | |
>>> x | |
array([[ 0, 1, 2, 3], | |
[ 4, 5, 6, 7], | |
[ 8, 9, 10, 11]]) | |
>>> x.sum(axis=1) | |
array([ 6, 22, 38]) | |
array | |
A homogeneous container of numerical elements. Each element in the | |
array occupies a fixed amount of memory (hence homogeneous), and | |
can be a numerical element of a single type (such as float, int | |
or complex) or a combination (such as ``(float, int, float)``). Each | |
array has an associated data-type (or ``dtype``), which describes | |
the numerical type of its elements:: | |
>>> x = np.array([1, 2, 3], float) | |
>>> x | |
array([ 1., 2., 3.]) | |
>>> x.dtype # floating point number, 64 bits of memory per element | |
dtype('float64') | |
# More complicated data type: each array element is a combination of | |
# and integer and a floating point number | |
>>> np.array([(1, 2.0), (3, 4.0)], dtype=[('x', int), ('y', float)]) | |
array([(1, 2.0), (3, 4.0)], | |
dtype=[('x', '<i4'), ('y', '<f8')]) | |
Fast element-wise operations, called `ufuncs`_, operate on arrays. | |
array_like | |
Any sequence that can be interpreted as an ndarray. This includes | |
nested lists, tuples, scalars and existing arrays. | |
attribute | |
A property of an object that can be accessed using ``obj.attribute``, | |
e.g., ``shape`` is an attribute of an array:: | |
>>> x = np.array([1, 2, 3]) | |
>>> x.shape | |
(3,) | |
BLAS | |
`Basic Linear Algebra Subprograms <http://en.wikipedia.org/wiki/BLAS>`_ | |
broadcast | |
NumPy can do operations on arrays whose shapes are mismatched:: | |
>>> x = np.array([1, 2]) | |
>>> y = np.array([[3], [4]]) | |
>>> x | |
array([1, 2]) | |
>>> y | |
array([[3], | |
[4]]) | |
>>> x + y | |
array([[4, 5], | |
[5, 6]]) | |
See `doc.broadcasting`_ for more information. | |
C order | |
See `row-major` | |
column-major | |
A way to represent items in a N-dimensional array in the 1-dimensional | |
computer memory. In column-major order, the leftmost index "varies the | |
fastest": for example the array:: | |
[[1, 2, 3], | |
[4, 5, 6]] | |
is represented in the column-major order as:: | |
[1, 4, 2, 5, 3, 6] | |
Column-major order is also known as the Fortran order, as the Fortran | |
programming language uses it. | |
decorator | |
An operator that transforms a function. For example, a ``log`` | |
decorator may be defined to print debugging information upon | |
function execution:: | |
>>> def log(f): | |
... def new_logging_func(*args, **kwargs): | |
... print "Logging call with parameters:", args, kwargs | |
... return f(*args, **kwargs) | |
... | |
... return new_logging_func | |
Now, when we define a function, we can "decorate" it using ``log``:: | |
>>> @log | |
... def add(a, b): | |
... return a + b | |
Calling ``add`` then yields: | |
>>> add(1, 2) | |
Logging call with parameters: (1, 2) {} | |
3 | |
dictionary | |
Resembling a language dictionary, which provides a mapping between | |
words and descriptions thereof, a Python dictionary is a mapping | |
between two objects:: | |
>>> x = {1: 'one', 'two': [1, 2]} | |
Here, `x` is a dictionary mapping keys to values, in this case | |
the integer 1 to the string "one", and the string "two" to | |
the list ``[1, 2]``. The values may be accessed using their | |
corresponding keys:: | |
>>> x[1] | |
'one' | |
>>> x['two'] | |
[1, 2] | |
Note that dictionaries are not stored in any specific order. Also, | |
most mutable (see *immutable* below) objects, such as lists, may not | |
be used as keys. | |
For more information on dictionaries, read the | |
`Python tutorial <http://docs.python.org/tut>`_. | |
Fortran order | |
See `column-major` | |
flattened | |
Collapsed to a one-dimensional array. See `ndarray.flatten`_ for details. | |
immutable | |
An object that cannot be modified after execution is called | |
immutable. Two common examples are strings and tuples. | |
instance | |
A class definition gives the blueprint for constructing an object:: | |
>>> class House(object): | |
... wall_colour = 'white' | |
Yet, we have to *build* a house before it exists:: | |
>>> h = House() # build a house | |
Now, ``h`` is called a ``House`` instance. An instance is therefore | |
a specific realisation of a class. | |
iterable | |
A sequence that allows "walking" (iterating) over items, typically | |
using a loop such as:: | |
>>> x = [1, 2, 3] | |
>>> [item**2 for item in x] | |
[1, 4, 9] | |
It is often used in combintion with ``enumerate``:: | |
>>> keys = ['a','b','c'] | |
>>> for n, k in enumerate(keys): | |
... print "Key %d: %s" % (n, k) | |
... | |
Key 0: a | |
Key 1: b | |
Key 2: c | |
list | |
A Python container that can hold any number of objects or items. | |
The items do not have to be of the same type, and can even be | |
lists themselves:: | |
>>> x = [2, 2.0, "two", [2, 2.0]] | |
The list `x` contains 4 items, each which can be accessed individually:: | |
>>> x[2] # the string 'two' | |
'two' | |
>>> x[3] # a list, containing an integer 2 and a float 2.0 | |
[2, 2.0] | |
It is also possible to select more than one item at a time, | |
using *slicing*:: | |
>>> x[0:2] # or, equivalently, x[:2] | |
[2, 2.0] | |
In code, arrays are often conveniently expressed as nested lists:: | |
>>> np.array([[1, 2], [3, 4]]) | |
array([[1, 2], | |
[3, 4]]) | |
For more information, read the section on lists in the `Python | |
tutorial <http://docs.python.org/tut>`_. For a mapping | |
type (key-value), see *dictionary*. | |
mask | |
A boolean array, used to select only certain elements for an operation:: | |
>>> x = np.arange(5) | |
>>> x | |
array([0, 1, 2, 3, 4]) | |
>>> mask = (x > 2) | |
>>> mask | |
array([False, False, False, True, True], dtype=bool) | |
>>> x[mask] = -1 | |
>>> x | |
array([ 0, 1, 2, -1, -1]) | |
masked array | |
Array that suppressed values indicated by a mask:: | |
>>> x = np.ma.masked_array([np.nan, 2, np.nan], [True, False, True]) | |
>>> x | |
masked_array(data = [-- 2.0 --], | |
mask = [ True False True], | |
fill_value = 1e+20) | |
<BLANKLINE> | |
>>> x + [1, 2, 3] | |
masked_array(data = [-- 4.0 --], | |
mask = [ True False True], | |
fill_value = 1e+20) | |
<BLANKLINE> | |
Masked arrays are often used when operating on arrays containing | |
missing or invalid entries. | |
matrix | |
A 2-dimensional ndarray that preserves its two-dimensional nature | |
throughout operations. It has certain special operations, such as ``*`` | |
(matrix multiplication) and ``**`` (matrix power), defined:: | |
>>> x = np.mat([[1, 2], [3, 4]]) | |
>>> x | |
matrix([[1, 2], | |
[3, 4]]) | |
>>> x**2 | |
matrix([[ 7, 10], | |
[15, 22]]) | |
method | |
A function associated with an object. For example, each ndarray has a | |
method called ``repeat``:: | |
>>> x = np.array([1, 2, 3]) | |
>>> x.repeat(2) | |
array([1, 1, 2, 2, 3, 3]) | |
ndarray | |
See *array*. | |
reference | |
If ``a`` is a reference to ``b``, then ``(a is b) == True``. Therefore, | |
``a`` and ``b`` are different names for the same Python object. | |
row-major | |
A way to represent items in a N-dimensional array in the 1-dimensional | |
computer memory. In row-major order, the rightmost index "varies | |
the fastest": for example the array:: | |
[[1, 2, 3], | |
[4, 5, 6]] | |
is represented in the row-major order as:: | |
[1, 2, 3, 4, 5, 6] | |
Row-major order is also known as the C order, as the C programming | |
language uses it. New Numpy arrays are by default in row-major order. | |
self | |
Often seen in method signatures, ``self`` refers to the instance | |
of the associated class. For example: | |
>>> class Paintbrush(object): | |
... color = 'blue' | |
... | |
... def paint(self): | |
... print "Painting the city %s!" % self.color | |
... | |
>>> p = Paintbrush() | |
>>> p.color = 'red' | |
>>> p.paint() # self refers to 'p' | |
Painting the city red! | |
slice | |
Used to select only certain elements from a sequence:: | |
>>> x = range(5) | |
>>> x | |
[0, 1, 2, 3, 4] | |
>>> x[1:3] # slice from 1 to 3 (excluding 3 itself) | |
[1, 2] | |
>>> x[1:5:2] # slice from 1 to 5, but skipping every second element | |
[1, 3] | |
>>> x[::-1] # slice a sequence in reverse | |
[4, 3, 2, 1, 0] | |
Arrays may have more than one dimension, each which can be sliced | |
individually:: | |
>>> x = np.array([[1, 2], [3, 4]]) | |
>>> x | |
array([[1, 2], | |
[3, 4]]) | |
>>> x[:, 1] | |
array([2, 4]) | |
tuple | |
A sequence that may contain a variable number of types of any | |
kind. A tuple is immutable, i.e., once constructed it cannot be | |
changed. Similar to a list, it can be indexed and sliced:: | |
>>> x = (1, 'one', [1, 2]) | |
>>> x | |
(1, 'one', [1, 2]) | |
>>> x[0] | |
1 | |
>>> x[:2] | |
(1, 'one') | |
A useful concept is "tuple unpacking", which allows variables to | |
be assigned to the contents of a tuple:: | |
>>> x, y = (1, 2) | |
>>> x, y = 1, 2 | |
This is often used when a function returns multiple values: | |
>>> def return_many(): | |
... return 1, 'alpha', None | |
>>> a, b, c = return_many() | |
>>> a, b, c | |
(1, 'alpha', None) | |
>>> a | |
1 | |
>>> b | |
'alpha' | |
ufunc | |
Universal function. A fast element-wise array operation. Examples include | |
``add``, ``sin`` and ``logical_or``. | |
view | |
An array that does not own its data, but refers to another array's | |
data instead. For example, we may create a view that only shows | |
every second element of another array:: | |
>>> x = np.arange(5) | |
>>> x | |
array([0, 1, 2, 3, 4]) | |
>>> y = x[::2] | |
>>> y | |
array([0, 2, 4]) | |
>>> x[0] = 3 # changing x changes y as well, since y is a view on x | |
>>> y | |
array([3, 2, 4]) | |
wrapper | |
Python is a high-level (highly abstracted, or English-like) language. | |
This abstraction comes at a price in execution speed, and sometimes | |
it becomes necessary to use lower level languages to do fast | |
computations. A wrapper is code that provides a bridge between | |
high and the low level languages, allowing, e.g., Python to execute | |
code written in C or Fortran. | |
Examples include ctypes, SWIG and Cython (which wraps C and C++) | |
and f2py (which wraps Fortran). | |
""" | |
from __future__ import division, absolute_import, print_function | |