File size: 8,775 Bytes
c011401
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
"""
=====================================
Structured Arrays (and Record Arrays)
=====================================

Introduction
============

Numpy provides powerful capabilities to create arrays of structs or records.
These arrays permit one to manipulate the data by the structs or by fields of
the struct. A simple example will show what is meant.: ::

 >>> x = np.zeros((2,),dtype=('i4,f4,a10'))
 >>> x[:] = [(1,2.,'Hello'),(2,3.,"World")]
 >>> x
 array([(1, 2.0, 'Hello'), (2, 3.0, 'World')],
      dtype=[('f0', '>i4'), ('f1', '>f4'), ('f2', '|S10')])

Here we have created a one-dimensional array of length 2. Each element of
this array is a record that contains three items, a 32-bit integer, a 32-bit
float, and a string of length 10 or less. If we index this array at the second
position we get the second record: ::

 >>> x[1]
 (2,3.,"World")

Conveniently, one can access any field of the array by indexing using the
string that names that field. In this case the fields have received the
default names 'f0', 'f1' and 'f2'. ::

 >>> y = x['f1']
 >>> y
 array([ 2.,  3.], dtype=float32)
 >>> y[:] = 2*y
 >>> y
 array([ 4.,  6.], dtype=float32)
 >>> x
 array([(1, 4.0, 'Hello'), (2, 6.0, 'World')],
       dtype=[('f0', '>i4'), ('f1', '>f4'), ('f2', '|S10')])

In these examples, y is a simple float array consisting of the 2nd field
in the record. But, rather than being a copy of the data in the structured
array, it is a view, i.e., it shares exactly the same memory locations.
Thus, when we updated this array by doubling its values, the structured
array shows the corresponding values as doubled as well. Likewise, if one
changes the record, the field view also changes: ::

 >>> x[1] = (-1,-1.,"Master")
 >>> x
 array([(1, 4.0, 'Hello'), (-1, -1.0, 'Master')],
       dtype=[('f0', '>i4'), ('f1', '>f4'), ('f2', '|S10')])
 >>> y
 array([ 4., -1.], dtype=float32)

Defining Structured Arrays
==========================

One defines a structured array through the dtype object.  There are
**several** alternative ways to define the fields of a record.  Some of
these variants provide backward compatibility with Numeric, numarray, or
another module, and should not be used except for such purposes. These
will be so noted. One specifies record structure in
one of four alternative ways, using an argument (as supplied to a dtype
function keyword or a dtype object constructor itself).  This
argument must be one of the following: 1) string, 2) tuple, 3) list, or
4) dictionary.  Each of these is briefly described below.

1) String argument (as used in the above examples).
In this case, the constructor expects a comma-separated list of type
specifiers, optionally with extra shape information.
The type specifiers can take 4 different forms: ::

  a) b1, i1, i2, i4, i8, u1, u2, u4, u8, f2, f4, f8, c8, c16, a<n>
     (representing bytes, ints, unsigned ints, floats, complex and
      fixed length strings of specified byte lengths)
  b) int8,...,uint8,...,float16, float32, float64, complex64, complex128
     (this time with bit sizes)
  c) older Numeric/numarray type specifications (e.g. Float32).
     Don't use these in new code!
  d) Single character type specifiers (e.g H for unsigned short ints).
     Avoid using these unless you must. Details can be found in the
     Numpy book

These different styles can be mixed within the same string (but why would you
want to do that?). Furthermore, each type specifier can be prefixed
with a repetition number, or a shape. In these cases an array
element is created, i.e., an array within a record. That array
is still referred to as a single field. An example: ::

 >>> x = np.zeros(3, dtype='3int8, float32, (2,3)float64')
 >>> x
 array([([0, 0, 0], 0.0, [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]),
        ([0, 0, 0], 0.0, [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]),
        ([0, 0, 0], 0.0, [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0]])],
       dtype=[('f0', '|i1', 3), ('f1', '>f4'), ('f2', '>f8', (2, 3))])

By using strings to define the record structure, it precludes being
able to name the fields in the original definition. The names can
be changed as shown later, however.

2) Tuple argument: The only relevant tuple case that applies to record
structures is when a structure is mapped to an existing data type. This
is done by pairing in a tuple, the existing data type with a matching
dtype definition (using any of the variants being described here). As
an example (using a definition using a list, so see 3) for further
details): ::

 >>> x = np.zeros(3, dtype=('i4',[('r','u1'), ('g','u1'), ('b','u1'), ('a','u1')]))
 >>> x
 array([0, 0, 0])
 >>> x['r']
 array([0, 0, 0], dtype=uint8)

In this case, an array is produced that looks and acts like a simple int32 array,
but also has definitions for fields that use only one byte of the int32 (a bit
like Fortran equivalencing).

3) List argument: In this case the record structure is defined with a list of
tuples. Each tuple has 2 or 3 elements specifying: 1) The name of the field
('' is permitted), 2) the type of the field, and 3) the shape (optional).
For example::

 >>> x = np.zeros(3, dtype=[('x','f4'),('y',np.float32),('value','f4',(2,2))])
 >>> x
 array([(0.0, 0.0, [[0.0, 0.0], [0.0, 0.0]]),
        (0.0, 0.0, [[0.0, 0.0], [0.0, 0.0]]),
        (0.0, 0.0, [[0.0, 0.0], [0.0, 0.0]])],
       dtype=[('x', '>f4'), ('y', '>f4'), ('value', '>f4', (2, 2))])

4) Dictionary argument: two different forms are permitted. The first consists
of a dictionary with two required keys ('names' and 'formats'), each having an
equal sized list of values. The format list contains any type/shape specifier
allowed in other contexts. The names must be strings. There are two optional
keys: 'offsets' and 'titles'. Each must be a correspondingly matching list to
the required two where offsets contain integer offsets for each field, and
titles are objects containing metadata for each field (these do not have
to be strings), where the value of None is permitted. As an example: ::

 >>> x = np.zeros(3, dtype={'names':['col1', 'col2'], 'formats':['i4','f4']})
 >>> x
 array([(0, 0.0), (0, 0.0), (0, 0.0)],
       dtype=[('col1', '>i4'), ('col2', '>f4')])

The other dictionary form permitted is a dictionary of name keys with tuple
values specifying type, offset, and an optional title. ::

 >>> x = np.zeros(3, dtype={'col1':('i1',0,'title 1'), 'col2':('f4',1,'title 2')})
 >>> x
 array([(0, 0.0), (0, 0.0), (0, 0.0)],
       dtype=[(('title 1', 'col1'), '|i1'), (('title 2', 'col2'), '>f4')])

Accessing and modifying field names
===================================

The field names are an attribute of the dtype object defining the record structure.
For the last example: ::

 >>> x.dtype.names
 ('col1', 'col2')
 >>> x.dtype.names = ('x', 'y')
 >>> x
 array([(0, 0.0), (0, 0.0), (0, 0.0)],
      dtype=[(('title 1', 'x'), '|i1'), (('title 2', 'y'), '>f4')])
 >>> x.dtype.names = ('x', 'y', 'z') # wrong number of names
 <type 'exceptions.ValueError'>: must replace all names at once with a sequence of length 2

Accessing field titles
====================================

The field titles provide a standard place to put associated info for fields.
They do not have to be strings. ::

 >>> x.dtype.fields['x'][2]
 'title 1'

Accessing multiple fields at once
====================================

You can access multiple fields at once using a list of field names: ::

 >>> x = np.array([(1.5,2.5,(1.0,2.0)),(3.,4.,(4.,5.)),(1.,3.,(2.,6.))],
         dtype=[('x','f4'),('y',np.float32),('value','f4',(2,2))])

Notice that `x` is created with a list of tuples. ::

 >>> x[['x','y']]
 array([(1.5, 2.5), (3.0, 4.0), (1.0, 3.0)],
      dtype=[('x', '<f4'), ('y', '<f4')])
 >>> x[['x','value']]
 array([(1.5, [[1.0, 2.0], [1.0, 2.0]]), (3.0, [[4.0, 5.0], [4.0, 5.0]]),
       (1.0, [[2.0, 6.0], [2.0, 6.0]])],
      dtype=[('x', '<f4'), ('value', '<f4', (2, 2))])

The fields are returned in the order they are asked for.::

 >>> x[['y','x']]
 array([(2.5, 1.5), (4.0, 3.0), (3.0, 1.0)],
      dtype=[('y', '<f4'), ('x', '<f4')])

Filling structured arrays
=========================

Structured arrays can be filled by field or row by row. ::

 >>> arr = np.zeros((5,), dtype=[('var1','f8'),('var2','f8')])
 >>> arr['var1'] = np.arange(5)

If you fill it in row by row, it takes a take a tuple
(but not a list or array!)::

 >>> arr[0] = (10,20)
 >>> arr
 array([(10.0, 20.0), (1.0, 0.0), (2.0, 0.0), (3.0, 0.0), (4.0, 0.0)],
      dtype=[('var1', '<f8'), ('var2', '<f8')])

More information
====================================
You can find some more information on recarrays and structured  arrays
(including the difference between the two) `here
<http://www.scipy.org/Cookbook/Recarray>`_.

"""
from __future__ import division, absolute_import, print_function